DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and Tollo

DIOPT Version :10

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_524757.1 Gene:Tollo / 44497 FlyBaseID:FBgn0029114 Length:1346 Species:Drosophila melanogaster


Alignment Length:1293 Identity:288/1293 - (22%)
Similarity:459/1293 - (35%) Gaps:397/1293 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 HLTEIPDDAFTGLERSLWELILPQNDL-------------VEIPSKSLRHLQKLRHLDLGYNHIT 164
            ||..|..:    ||.:.:.:|.|||.:             ..:...|.|.|.:||.|.:.|..:.
  Fly    51 HLRTINSE----LENTNFSVIQPQNTVRLRLECNDALFFQSSLSPDSFRSLVELRDLTIEYCKLG 111

  Fly   165 HIQHDSFRGLEDSLQTLILR------ENCISQLMSHSFSGLLILETLDLSGNNLFEIDPNVFVDG 223
            ::...|||||:: |:.|.:|      .....::.|:||.....||.||||.||::.|.     ||
  Fly   112 NLTDGSFRGLQE-LRNLTIRTHNGDWSTMSLEMASNSFVEFRQLERLDLSLNNIWLIP-----DG 170

  Fly   224 MPRLTRLLLTDNILSEIPYDALGPLKSLRTLDISHNVIWSLSGNETYEIKASTK------LNLDN 282
            |                    :.|||||:.|:.|:|.|..:| |..:....|::      ..|.:
  Fly   171 M--------------------VCPLKSLQHLNASYNKIQDIS-NFYFSASLSSRKARVCGSTLQS 214

  Fly   283 LHLEYNHIEVLPPNSFKYFDTVNRTFFDGNPIHTLREDAFKPARIREIYMRYCGLTNISPVAFDS 347
            |.|..|.:..||                     |....|.  .|:..:.|....::.::..||:.
  Fly   215 LDLSANKMVSLP---------------------TAMLSAL--GRLTHLNMAKNSMSFLADRAFEG 256

  Fly   348 LVNSLQILDLSGNNLTKLHHKLFNNFDVLRVISMRDNKIKIQKPTETFNAVHYTLLKLDLSGDRN 412
            |: ||:::|||.|.||.|..:||.....|:.|.:|:|.|.:..| ..|..: ..||.|||:.:  
  Fly   257 LL-SLRVVDLSANRLTSLPPELFAETKQLQEIYLRNNSINVLAP-GIFGEL-AELLVLDLASN-- 316

  Fly   413 DPTNLQTLRKMRNMRSLSISRLGSSSVGPEDFKDFGVELEDLQITRASLSGIQSHAFKHVRGLKR 477
                                                 ||....|..|:..|:        :.|..
  Fly   317 -------------------------------------ELNSQWINAATFVGL--------KRLMM 336

  Fly   478 LDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTS 542
            ||.|.|.||.:|...|                          |.|.|||.|...:|:|..:....
  Fly   337 LDLSANKISRLEAHIF--------------------------RPLASLQILKLEDNYIDQLPGGI 375

  Fly   543 FHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDN 607
            |..|.||..|.|..|||..:.:.|.||  ...|..:||.||.::.:.|.:..:...|:.|||:||
  Fly   376 FADLTNLHTLILSRNRISVIEQRTLQG--LKNLLVLSLDFNRISRMDQRSLVNCSQLQDLHLNDN 438

  Fly   608 KIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDYFDQVGTLS 672
            |:..:. .|..::..|:.|.:..|.|:.:.:.|...|..|..|.|..|.|.:.....||::    
  Fly   439 KLQAVP-EALAHVQLLKTLDVGENMISQIENTSITQLESLYGLRMTENSLTHIRRGVFDRM---- 498

  Fly   673 NLNVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRPAEISLTHLHLG 737
                                           |:::||:||.|.:..|..|..: ....|..:.|.
  Fly   499 -------------------------------SSLQILNLSQNKLKSIEAGSLQ-RNSQLQAIRLD 531

  Fly   738 YNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQG 802
            .|.| .:...:|..:|:|.||::|.|.:.:.|:                   |.||       .|
  Fly   532 GNQL-KSIAGLFTELPNLVWLNISGNRLEKFDY-------------------SHIP-------IG 569

  Fly   803 LRIVDFSHNHLRGLPDNLF---YNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLSNNFIST 864
            |:.:|...|.:..| .|.|   ....:...|.|:|::.:|.:||:.:...:    |:|::|.|| 
  Fly   570 LQWLDVRANRITQL-GNYFEIESELSLSTFDASYNLLTEITASSIPNSVEV----LYLNDNQIS- 628

  Fly   865 IHSMDLSNKFRSLRYLDISYNYLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFMGLENSLIKL 929
                                    :|....|...|.|..:||..||               |..|
  Fly   629 ------------------------KIQPYTFFKKPNLTRVDLVRNR---------------LTTL 654

  Fly   930 GLENISLSTVPEIRLKYLREFRLGYNELPSIPQELAHNMS-NLRMLDLSNNDLTNVP-LMTQALP 992
            ....:.||.:.|.|  .:.||.:|:|         |:... ||..|...|.:....| ||.....
  Fly   655 EPNALRLSPIAEDR--EIPEFYIGHN---------AYECDCNLDWLQKVNRESRTQPQLMDLDQI 708

  Fly   993 HLRRLMLSGNPITSLNNNSFDGVNEDLEMLDISNFRLHYFEY-GCLDSLPHLRSLKLTAYSHLEH 1056
            |.|.....|:...||    .:..::|.    :..:..|.|.. .|.|                  
  Fly   709 HCRLAYARGSSHVSL----IEAKSDDF----LCKYASHCFALCHCCD------------------ 747

  Fly  1057 FNIPHLLRHHYNIRQLWIEAP--------QPFTRIVKKGSGPTQEMQTLQLGNPTD-LQREMEGH 1112
                      :......:|.|        |.:|..|...|..:.| |||....|.| .|..::|:
  Fly   748 ----------FQACDCKMECPDRCSCYHDQSWTSNVVDCSRASYE-QTLPSHIPMDSTQLYLDGN 801

  Fly  1113 LPSKLTNITFSGP---QFTNLNERILRGMRSPYLY-------MQLFNTSLQALPPNFFKYMGRVR 1167
            ...:|.:..|.|.   :..:||...:..:.:...|       :||.:..|:||..|.|:.:..::
  Fly   802 NFRELQSHAFIGRKRLKVLHLNHSRIEVLHNRTFYGLLELEVLQLQSNQLKALNGNEFQGLDNLQ 866

  Fly  1168 NISLDIR-------------YHNRNLKKIPNPNTG-AV-PYLPNSVFLTDLKMSHTDLNCDCDLG 1217
            .:.|...             ||.:.|:...|..|. || .:||:  :|.:|:::.....|.|   
  Fly   867 ELYLQHNAIATIDTLTFTHLYHLKILRLDHNAITSFAVWNFLPS--YLNELRLASNPWTCSC--- 926

  Fly  1218 WVEFWQRKRRQYICSSQTWTDTVFRTFMNSPCQVYGRHNCDE--------HDDDLRETRCENKGG 1274
              ||.. |.|.||...:...|.     :...|.|...::..:        ....|...:|.....
  Fly   927 --EFID-KLRDYINRHEYVVDK-----LKMKCDVISGNSTQQMVIYPGSGEPASLPVVQCSQTLP 983

  Fly  1275 QQLMEALKFDLECGWDNANCREA----------------------AFVVVMVCVAMVF 1310
            ..|.....:..:.|.:||:...:                      ||:.||:|:::||
  Fly   984 LGLDNNFNYAEQAGGENASNATSTKMILNQPPKLDYIPILVAILTAFIFVMICISLVF 1041

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 LRR <84..320 CDD:443914 58/231 (25%)
leucine-rich repeat 84..103 CDD:275380
leucine-rich repeat 104..128 CDD:275380 5/14 (36%)
leucine-rich repeat 129..152 CDD:275380 7/35 (20%)
leucine-rich repeat 153..177 CDD:275380 9/23 (39%)
leucine-rich repeat 178..201 CDD:275380 6/28 (21%)
leucine-rich repeat 202..226 CDD:275380 12/23 (52%)
leucine-rich repeat 227..250 CDD:275380 2/22 (9%)
leucine-rich repeat 251..279 CDD:275380 8/33 (24%)
leucine-rich repeat 280..326 CDD:275380 8/45 (18%)
leucine-rich repeat 327..348 CDD:275380 3/20 (15%)
leucine-rich repeat 352..375 CDD:275380 10/22 (45%)
PPP1R42 355..564 CDD:455733 52/208 (25%)
leucine-rich repeat 376..401 CDD:275380 7/24 (29%)
leucine-rich repeat 426..450 CDD:275378 0/23 (0%)
leucine-rich repeat 451..474 CDD:275380 4/22 (18%)
LRR_8 473..559 CDD:404697 24/85 (28%)
leucine-rich repeat 475..524 CDD:275380 11/48 (23%)
leucine-rich repeat 500..519 CDD:275380 0/18 (0%)
leucine-rich repeat 525..548 CDD:275380 7/22 (32%)
LRR <540..>834 CDD:443914 71/296 (24%)
leucine-rich repeat 549..574 CDD:275380 9/24 (38%)
leucine-rich repeat 575..598 CDD:275380 6/22 (27%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
leucine-rich repeat 623..646 CDD:275380 6/22 (27%)
leucine-rich repeat 647..730 CDD:275380 15/82 (18%)
leucine-rich repeat 648..673 CDD:275380 6/24 (25%)
leucine-rich repeat 674..705 CDD:275380 0/30 (0%)
LRR <730..1081 CDD:443914 72/364 (20%)
leucine-rich repeat 731..754 CDD:275380 5/22 (23%)
leucine-rich repeat 755..778 CDD:275380 6/22 (27%)
leucine-rich repeat 779..802 CDD:275380 3/22 (14%)
leucine-rich repeat 803..823 CDD:275380 6/22 (27%)
leucine-rich repeat 852..876 CDD:275380 5/23 (22%)
leucine-rich repeat 877..900 CDD:275380 2/22 (9%)
leucine-rich repeat 901..925 CDD:275380 5/23 (22%)
leucine-rich repeat 926..946 CDD:275380 6/19 (32%)
leucine-rich repeat 947..970 CDD:275380 5/23 (22%)
leucine-rich repeat 971..993 CDD:275380 6/22 (27%)
leucine-rich repeat 994..1014 CDD:275380 4/19 (21%)
leucine-rich repeat 1019..1042 CDD:275380 4/23 (17%)
TolloNP_524757.1 LRR 54..400 CDD:443914 116/475 (24%)
leucine-rich repeat 100..123 CDD:275380 9/22 (41%)
leucine-rich repeat 124..144 CDD:275380 3/19 (16%)
leucine-rich repeat 154..177 CDD:275380 14/47 (30%)
leucine-rich repeat 178..201 CDD:275380 7/23 (30%)
leucine-rich repeat 212..235 CDD:275380 8/45 (18%)
leucine-rich repeat 236..259 CDD:275380 4/23 (17%)
LRR 239..634 CDD:443914 130/566 (23%)
leucine-rich repeat 260..283 CDD:275380 10/22 (45%)
leucine-rich repeat 284..307 CDD:275380 7/24 (29%)
leucine-rich repeat 308..333 CDD:275380 10/71 (14%)
leucine-rich repeat 334..357 CDD:275380 11/48 (23%)
leucine-rich repeat 358..381 CDD:275380 7/22 (32%)
leucine-rich repeat 382..405 CDD:275380 9/24 (38%)
leucine-rich repeat 406..429 CDD:275380 6/22 (27%)
leucine-rich repeat 430..452 CDD:275380 8/22 (36%)
leucine-rich repeat 453..500 CDD:275380 13/81 (16%)
leucine-rich repeat 501..521 CDD:275380 7/20 (35%)
leucine-rich repeat 525..547 CDD:275380 5/22 (23%)
leucine-rich repeat 548..573 CDD:275380 11/50 (22%)
leucine-rich repeat 604..640 CDD:275380 10/64 (16%)
LRR_8 616..>660 CDD:404697 15/87 (17%)
leucine-rich repeat 641..688 CDD:275380 18/72 (25%)
leucine-rich repeat 689..816 CDD:275380 32/163 (20%)
LRR <794..>920 CDD:443914 27/127 (21%)
leucine-rich repeat 817..864 CDD:275380 10/46 (22%)
leucine-rich repeat 865..888 CDD:275380 1/22 (5%)
leucine-rich repeat 889..910 CDD:275380 6/20 (30%)
TIR 1076..1211 CDD:214587
Blue background indicates that the domain is not in the aligned region.

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