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Protein Alignment chp and 2mit

DIOPT Version :9

Sequence 1:	NP_001263137.1	Gene:	chp / 43690	FlyBaseID:	FBgn0267435	Length:	1338	Species:	Drosophila melanogaster
Sequence 2:	NP_001262529.1	Gene:	2mit / 41616	FlyBaseID:	FBgn0260793	Length:	1155	Species:	Drosophila melanogaster

Alignment Length:	684	Identity:	147/684 - (21%)
Similarity:	258/684 - (37%)	Gaps:	205/684 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly   597 EALRKLHLDDNKID---------------KIERRAFMNLDELEYLSLRGNKINNLADESFQNLPK 646
            :::.::..|:|:.|               ::|..|..|...|.:..||  ..|:...:...:...
  Fly    60 QSIHRMLRDENEPDSFRGELRYQQKRHKRELELNAPANKLNLTHRDLR--TFNSTGGQWKGDFQV 122

  Fly   647 LEILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKI--- 708
            :..:|::.|||.:.:.|.|:|:..|     ::.:|.:..:..:           :..:|:.:
  Fly   123 ITAMDLSSNQLESLSLDNFNQLRQL-----DLGNNSLEVIPLS-----------LADTNMSLPFV 171

  Fly   709 -LDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFDA 772
             ||||.|..|.|...:|......|.:|:|.:|.|:|.:|:.|.|:..||.|.||:|.|.::|::.
  Fly   172 TLDLSCNKFSQISTSFFAQRLPQLKNLNLAHNELLNISRESFYNLLELQTLVLSHNNISDIDYET 236

  Fly   773 FKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRGLPD----NLFYN---------- 823
            |.....||.:...||.||           |..|     ..|:|:||    ::.||
  Fly   237 FLALPNLQYLDLSHNRLS-----------GSAI-----RALQGIPDLVSLSIAYNPDVGVAMQEF 285

  Fly   824 ---GGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDISYN 885
               ..:::||.|...:.::|::...|:..     |.||:|::..|:..|: :.:..|:|||:|::
  Fly   286 VASWSLKELDASGTGLCQVPAALAQSVRT-----LKLSDNWLKAINCGDM-DSYPLLQYLDLSHS 344

  Fly   886 YLLRIDDAVFATM---------------------PKLAVLDLSHNRDLKVMDKSFMGLENSLIKL 929
            .:.:::|.....:                     |.|..|.|.||:.:::..::|:||.| |..|
  Fly   345 RIAQVEDDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFVGLVN-LQTL 408

  Fly   930 GLENISLSTVPEIRLKYLREFRLGYNELPSIPQELAHNMSNLRMLDLSNNDLTNVPLMTQALPHL 994
            .|.|..|..:|.:.|..|....|..:.:.|:.|.:.|                       .||.|
  Fly   409 DLSNNRLIFLPPLSLPKLLTLNLESSGVESVSQSIVH-----------------------TLPQL 450

  Fly   995 RRLMLSGNPIT--------------------SLNNNSFDG-VNEDLEMLDISNFRLHYFEYGC-- 1036
            |.|:|..|||.                    ..|..|..| |:...|.|...||..::....|
  Fly   451 RDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQFHNFYENFSSRECGI 515

  Fly  1037 ----LDSLPHLRSL-----KLT----AYSHLEHFNIPHLLRHHYNIRQLWIEAPQPFTRI-VKKG 1087
                .|:.|...||     .||    :.|.:|...                ||....|.: |...
  Fly   516 RKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQ----------------EAQATATSVEVAAA 564

  Fly  1088 SGPTQEMQTLQLGN-------PTDLQRE-----------------------MEGHLPSKLTNITF 1122
            :..|.|...:|..:       .|..:||                       ..|::|::||..|.
  Fly   565 TAATSEKTGIQATSAAQSTAAATTAEREAIATATSSDTTATPTLAAAAAIQSAGNIPAQLTTKTL 629

  Fly  1123 SGPQFTNLNERILRGMRSPYLYMQLFNTSLQALP 1156
            ...:.|:| .::.|..:.|.:..:...|..:.||
  Fly   630 RPTETTSL-AQLQRRQQMPGMPAKTTETPAKNLP 662

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.