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Protein Alignment chp and CG18249

DIOPT Version :10

Sequence 1:	NP_001263137.1	Gene:	chp / 43690	FlyBaseID:	FBgn0267435	Length:	1338	Species:	Drosophila melanogaster
Sequence 2:	NP_001163549.1	Gene:	CG18249 / 40964	FlyBaseID:	FBgn0037553	Length:	559	Species:	Drosophila melanogaster

Alignment Length:	493	Identity:	120/493 - (24%)
Similarity:	193/493 - (39%)	Gaps:	112/493 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly   449 VELEDLQITRASLSGIQSHAFKHVRGLKRLDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSA 513
            ::|.:|.:...|...|.....:...||:.|        .|.|.|.:.|  |..||:
  Fly    55 LQLRELHLRNCSRQSITWLVLQLTPGLRTL--------VIRNCATYHI--SKESLR--------- 100

  Fly   514 LPAEPLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEI 578
                |:.:|||||   .....:..:.|..|:.:..|.:|:|..|.|..|....|||  .|||..:
  Fly   101 ----PVENLTSLQ---MQGTSLGVLRDQIFNAVPRLEILQLSQNFIHTVHVAAFQG--LSKLRLL 156

  Fly   579 SLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQN 643
            .|:.|.:..|...|...|..|..|.|..|::..:.:..|....:|:.|.|.||.:..|..:...:
  Fly   157 GLQGNAIAEILSSTLDPLMELVHLDLSRNELTTLPQNIFAKNKKLQTLLLNGNPLRILMPDVLGS 221

  Fly   644 LPKLEILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKI 708
            ||.|.:||:.             ....|..:.:|:::.| ..::..||.|....:||.    ||:
  Fly   222 LPNLRLLDLG-------------HAAELEVMTLNLTNVQ-NLVLEGSSLSSLVINGGF----IKL 268

  Fly   709 LDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLM------------NTTRDVFGNMPHLQWLDLS 761
              .:.||              .|.||.:|..|.:            |.|..:...|.:||.||||
  Fly   269 --QAGNN--------------ELNHLQVGNKSSVIEMDLHGNLLNGNDTAALLRGMWNLQRLDLS 317

  Fly   762 YNWI-----HELDFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRGL-PDNL 820
            .|.|     |....|| ..|::|.:                  :..|:.::.::|.|..| |::.
  Fly   318 KNRIEALPQHGSGLDA-SGTQELLI------------------LPSLKFLNLANNQLVRLPPESP 363

  Fly   821 FYNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDISYN 885
            ..:..:..||:|||:||.:..:.|.||:.|.  .|::..|.::||:...|..:...|..|.:..|
  Fly   364 ILSSRLSYLDLSHNLMLTLDVAILRSLSVLK--GLYVEGNRLNTINYQKLHEEHPDLSELGLHDN 426

  Fly   886 ----------YLLRIDDAV-FATMPKLAVLDLSHNRDL 912
                      :|...|..| ....|:..||:.|...|:
  Fly   427 PWSSGLYRKMFLYFTDRGVHLQARPQNRVLNKSSRVDI 464

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.