DRSC/TRiP Functional Genomics Resources

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Protein Alignment chp and CG4950

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster


Alignment Length:706 Identity:144/706 - (20%)
Similarity:254/706 - (35%) Gaps:248/706 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   525 LQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSIS 589
            |:.||.||.:|..::..:|....||..|.|..|.:..:....|.|  .:.|..:.|.:|.::|:|
  Fly    96 LKTLDVSNTNILELTRNAFSAASNLTYLNLAYNNLTSIQTSVFIG--ANVLMRLDLSYNEISSLS 158

  Fly   590 QHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAF 654
            .:.|..|..:.:::|..|.:.::....|.:.:.||.:|..||.:.::..|.|:|:.:        
  Fly   159 VNAFCGLHTISQIYLTGNLLKELHNDIFKDNEYLEKVSFEGNLLTSIQPEVFRNMRR-------- 215

  Fly   655 NQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLSHNNISII 719
                                                               ||.::||:|.:..|
  Fly   216 ---------------------------------------------------IKEVNLSNNRLIFI 229

  Fly   720 HPGYFRPAEISLTHLHLGYNSLMN---TTRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQL 781
            ||..|..| .||.:|.|.||.|.|   |.:::                :|:|..|          
  Fly   230 HPDTFADA-ASLENLVLSYNELKNFQLTEKNI----------------VHQLHLD---------- 267

  Fly   782 VFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRGLPDNLFYNGGM--EKLDVSHNMMLKIPSSSL 844
                :|||:::      .:...|.|..|||.:    ..||.:..:  |.||:|.|.:     ||:
  Fly   268 ----NNYLTNL------TINATRFVRASHNQI----SELFLHQSLHIETLDLSANKL-----SSI 313

  Fly   845 SSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDAVFATMPKLAVLDLSHN 909
            |::..:|              |.:          |||:|.|.:..::.:.|:.:.:|..|:|...
  Fly   314 SNITNIT--------------HML----------YLDVSDNPIGPLNISTFSQLKRLRGLNLRGT 354

  Fly   910 RDLKVMDKSFMGLENSLIKLGLENISLSTVPEIRLKYLREFRLGYNELPSIPQELAHNMSNLRML 974
                       |:..  :|.|:.:         :.|||.|                        |
  Fly   355 -----------GIRE--LKFGMFS---------KQKYLEE------------------------L 373

  Fly   975 DLSNNDLT--NVPLMTQALPHLRRLMLSGNPITSL-NNNSFDGVNEDLEMLDISNFRLHYFEYGC 1036
            |||.|:||  |:.:....|.:|::.::.||.:|.| .|.:|......|:.|.:|..|     :.|
  Fly   374 DLSFNNLTILNLDMFVPYLTNLKKFLIDGNGLTELQGNRTFSEAFPQLQKLGVSRNR-----FNC 433

  Fly  1037 LDSLPHLRSLKLTAYSHLEHFNIPHLLRHH--YNIRQLWIEAPQPFTRI-----VKKGSGPTQEM 1094
                           |:|.|..||..|...  .||        :|.|.:     ::..|..:|..
  Fly   434 ---------------SYLHHLLIPPSLPESVVLNI--------EPDTNLDETPHIRDVSCISQSQ 475

  Fly  1095 QTLQLGNPTDLQREMEGHLPSKLTNITFSGPQFTNLNERILRGMRSPYLYMQLFNTSLQALPPNF 1159
            :.:. .:.|..:.::|..:......:...|....||...:        .:||:|...:..|    
  Fly   476 EVVN-ASFTAEESKLESQIQMLSKQLDIVGSHSKNLELHL--------AFMQIFAYVMGGL---- 527

  Fly  1160 FKYMGRVRNISLDIRYHNRNLKKIPNPNTG-----AVPYLPNSVFLTDLKMSHTDL 1210
             ..:|.|..|:|  ||       :.|..:|     ::.:..|:....:|.:...||
  Fly   528 -VLVGVVSLITL--RY-------LKNQRSGRYDRSSIVFRSNATMEANLTLGSEDL 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380
LRR_8 102..163 CDD:290566
leucine-rich repeat 104..128 CDD:275380
LRR_RI <128..261 CDD:238064
leucine-rich repeat 129..152 CDD:275380
LRR_8 152..212 CDD:290566
leucine-rich repeat 153..177 CDD:275380
leucine-rich repeat 178..201 CDD:275380
LRR_8 202..261 CDD:290566
leucine-rich repeat 202..226 CDD:275380
leucine-rich repeat 227..250 CDD:275380
leucine-rich repeat 251..279 CDD:275380
leucine-rich repeat 280..326 CDD:275380
LRR_8 326..386 CDD:290566
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 352..375 CDD:275380
leucine-rich repeat 376..401 CDD:275380
leucine-rich repeat 426..450 CDD:275378
LRR_RI <448..651 CDD:238064 32/125 (26%)
leucine-rich repeat 451..474 CDD:275380
LRR_8 473..559 CDD:290566 12/33 (36%)
leucine-rich repeat 475..524 CDD:275380
leucine-rich repeat 500..519 CDD:275380
leucine-rich repeat 525..548 CDD:275380 7/22 (32%)
leucine-rich repeat 549..574 CDD:275380 6/24 (25%)
LRR_8 573..633 CDD:290566 15/59 (25%)
leucine-rich repeat 575..598 CDD:275380 7/22 (32%)
leucine-rich repeat 599..622 CDD:275380 3/22 (14%)
LRR_8 622..683 CDD:290566 8/60 (13%)
leucine-rich repeat 623..646 CDD:275380 8/22 (36%)
leucine-rich repeat 647..730 CDD:275380 10/82 (12%)
leucine-rich repeat 648..673 CDD:275380 0/24 (0%)
leucine-rich repeat 674..705 CDD:275380 0/30 (0%)
LRR_8 704..763 CDD:290566 19/61 (31%)
leucine-rich repeat 731..754 CDD:275380 8/25 (32%)
LRR_8 753..813 CDD:290566 11/59 (19%)
leucine-rich repeat 755..778 CDD:275380 3/22 (14%)
leucine-rich repeat 779..802 CDD:275380 3/22 (14%)
leucine-rich repeat 803..823 CDD:275380 7/19 (37%)
leucine-rich repeat 852..876 CDD:275380 1/23 (4%)
LRR_8 854..910 CDD:290566 10/55 (18%)
LRR_RI <877..>1006 CDD:238064 28/130 (22%)
leucine-rich repeat 877..900 CDD:275380 6/22 (27%)
leucine-rich repeat 901..925 CDD:275380 4/23 (17%)
leucine-rich repeat 926..946 CDD:275380 2/19 (11%)
LRR_8 947..1004 CDD:290566 14/58 (24%)
leucine-rich repeat 947..970 CDD:275380 2/22 (9%)
leucine-rich repeat 971..993 CDD:275380 9/23 (39%)
LRR_8 992..1049 CDD:290566 12/57 (21%)
leucine-rich repeat 994..1014 CDD:275380 7/20 (35%)
leucine-rich repeat 1019..1042 CDD:275380 5/22 (23%)
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 7/22 (32%)
LRR_8 118..178 CDD:290566 16/61 (26%)
leucine-rich repeat 120..143 CDD:275380 6/24 (25%)
leucine-rich repeat 144..167 CDD:275380 7/22 (32%)
leucine-rich repeat 168..191 CDD:275380 3/22 (14%)
LRR_8 192..250 CDD:290566 24/117 (21%)
leucine-rich repeat 192..215 CDD:275380 8/22 (36%)
LRR_RI <207..432 CDD:238064 81/404 (20%)
leucine-rich repeat 216..239 CDD:275380 10/23 (43%)
leucine-rich repeat 240..299 CDD:275380 21/98 (21%)
LRR_8 299..356 CDD:290566 19/96 (20%)
leucine-rich repeat 300..321 CDD:275380 9/39 (23%)
leucine-rich repeat 322..345 CDD:275380 6/32 (19%)
LRR_8 344..405 CDD:290566 22/106 (21%)
leucine-rich repeat 346..365 CDD:275380 6/31 (19%)
leucine-rich repeat 370..394 CDD:275380 11/47 (23%)
leucine-rich repeat 395..420 CDD:275380 7/24 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453806
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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