DRSC/TRiP Functional Genomics Resources

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Protein Alignment chp and CG32055

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_729599.1 Gene:CG32055 / 39188 FlyBaseID:FBgn0052055 Length:534 Species:Drosophila melanogaster


Alignment Length:558 Identity:141/558 - (25%)
Similarity:231/558 - (41%) Gaps:143/558 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   401 TLLKLDLS-------GDRNDPTNLQTLRKMRNMRSLSISRLGSSSV-GPEDFKDFGVELED-LQI 456
            |||:||||       |::. ..:.:.|:|: |:....:..|.|... .|.:..:|.|...| |.|
  Fly    75 TLLQLDLSESGGVTLGEKG-LQDFKALQKL-NLTHAQLDELKSEQFPNPSEMINFDVSYNDILAI 137

  Fly   457 TRASLSG----------------IQSHAFKHVRGLKRLDFSENGISSI-----ENDAFHEI-GHS 499
            |...:||                |:.:||:|::.|:.||.:.|...:|     .|..|..| .::
  Fly   138 TTKLMSGFGNLVYANFSENLIAVIEPNAFRHMKNLRFLDLTTNYQENITLGENANLRFLSISNNN 202

  Fly   500 LISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLK 564
            |...:..|           ||.|..|:||...:|.:..:....|:.|.|||:|.:.:|.:.::.:
  Fly   203 LRDFQWCH-----------LRVLPKLEELHLHSNWLEHLDMGIFYALPNLRVLNVSNNNLFEIKR 256

  Fly   565 GTFQ--GDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLS 627
            ..|.  |:| :.||.:....|.:..:....|..|:.||.|:|..|:|::|..|||:.|..|:.|.
  Fly   257 TLFMAPGEI-APLELLDYSSNIVKVLDDSVFCRLKKLRTLNLWLNQINRIHPRAFLGLSSLQTLH 320

  Fly   628 LRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYNSSW 692
            |:||||:.|.|:.|.||..||.||::.|.:.......|.:             ..:|:|:|    
  Fly   321 LQGNKISILPDDVFANLTALEKLDLSKNNIQKLGLRVFGE-------------RILRKLIY---- 368

  Fly   693 SGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQW 757
                            ||||:|.|:.:||       ::|:                  :||.::.
  Fly   369 ----------------LDLSNNYIADLHP-------LALS------------------SMPFIKE 392

  Fly   758 LDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRGLPDNLFY 822
            |.|..|.:..||...|...:||||:....|.|.:|..:|...:..|..::.::|.|..|||    
  Fly   393 LRLRRNRLVSLDLRMFAPLRQLQLLTINENRLEEIDGEILDTLDRLNHLELNNNRLTFLPD---- 453

  Fly   823 NGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDISYNYL 887
                  |..|.| :|::.:.:|.......||              :|....:.:.|:  :||   
  Fly   454 ------LKSSQN-LLQLRNITLEGNPWQCLC--------------LDEITSWLNGRH--VSY--- 492

  Fly   888 LRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFMGLENS 925
            .|...|.|:....|.|        :..|||....|:.:
  Fly   493 ARPSSAYFSGRKPLCV--------VTPMDKCLRDLQET 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380
LRR_8 102..163 CDD:290566
leucine-rich repeat 104..128 CDD:275380
LRR_RI <128..261 CDD:238064
leucine-rich repeat 129..152 CDD:275380
LRR_8 152..212 CDD:290566
leucine-rich repeat 153..177 CDD:275380
leucine-rich repeat 178..201 CDD:275380
LRR_8 202..261 CDD:290566
leucine-rich repeat 202..226 CDD:275380
leucine-rich repeat 227..250 CDD:275380
leucine-rich repeat 251..279 CDD:275380
leucine-rich repeat 280..326 CDD:275380
LRR_8 326..386 CDD:290566
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 352..375 CDD:275380
leucine-rich repeat 376..401 CDD:275380 141/558 (25%)
leucine-rich repeat 426..450 CDD:275378 4/24 (17%)
LRR_RI <448..651 CDD:238064 68/227 (30%)
leucine-rich repeat 451..474 CDD:275380 10/39 (26%)
LRR_8 473..559 CDD:290566 24/91 (26%)
leucine-rich repeat 475..524 CDD:275380 13/54 (24%)
leucine-rich repeat 500..519 CDD:275380 2/18 (11%)
leucine-rich repeat 525..548 CDD:275380 6/22 (27%)
leucine-rich repeat 549..574 CDD:275380 7/26 (27%)
LRR_8 573..633 CDD:290566 21/59 (36%)
leucine-rich repeat 575..598 CDD:275380 5/22 (23%)
leucine-rich repeat 599..622 CDD:275380 11/22 (50%)
LRR_8 622..683 CDD:290566 18/60 (30%)
leucine-rich repeat 623..646 CDD:275380 12/22 (55%)
leucine-rich repeat 647..730 CDD:275380 17/82 (21%)
leucine-rich repeat 648..673 CDD:275380 5/24 (21%)
leucine-rich repeat 674..705 CDD:275380 3/30 (10%)
LRR_8 704..763 CDD:290566 13/58 (22%)
leucine-rich repeat 731..754 CDD:275380 2/22 (9%)
LRR_8 753..813 CDD:290566 17/59 (29%)
leucine-rich repeat 755..778 CDD:275380 6/22 (27%)
leucine-rich repeat 779..802 CDD:275380 7/22 (32%)
leucine-rich repeat 803..823 CDD:275380 6/19 (32%)
leucine-rich repeat 852..876 CDD:275380 3/23 (13%)
LRR_8 854..910 CDD:290566 9/55 (16%)
LRR_RI <877..>1006 CDD:238064 12/49 (24%)
leucine-rich repeat 877..900 CDD:275380 6/22 (27%)
leucine-rich repeat 901..925 CDD:275380 6/23 (26%)
leucine-rich repeat 926..946 CDD:275380 141/558 (25%)
LRR_8 947..1004 CDD:290566
leucine-rich repeat 947..970 CDD:275380
leucine-rich repeat 971..993 CDD:275380
LRR_8 992..1049 CDD:290566
leucine-rich repeat 994..1014 CDD:275380
leucine-rich repeat 1019..1042 CDD:275380
CG32055NP_729599.1 leucine-rich repeat 76..99 CDD:275380 7/23 (30%)
leucine-rich repeat 100..123 CDD:275380 6/23 (26%)
LRR_8 128..180 CDD:290566 14/51 (27%)
leucine-rich repeat 128..147 CDD:275380 7/18 (39%)
leucine-rich repeat 148..171 CDD:275380 4/22 (18%)
leucine-rich repeat 172..192 CDD:275380 5/19 (26%)
LRR_RI <187..400 CDD:238064 73/282 (26%)
LRR_8 192..251 CDD:290566 19/69 (28%)
leucine-rich repeat 193..216 CDD:275380 7/33 (21%)
leucine-rich repeat 217..240 CDD:275380 6/22 (27%)
leucine-rich repeat 241..267 CDD:275380 7/26 (27%)
leucine-rich repeat 268..291 CDD:275380 5/22 (23%)
LRR_8 290..350 CDD:290566 28/59 (47%)
leucine-rich repeat 292..315 CDD:275380 11/22 (50%)
leucine-rich repeat 316..339 CDD:275380 12/22 (55%)
LRR_8 340..400 CDD:290566 23/117 (20%)
leucine-rich repeat 340..365 CDD:275380 6/37 (16%)
leucine-rich repeat 366..389 CDD:275380 12/67 (18%)
leucine-rich repeat 390..413 CDD:275380 6/22 (27%)
LRR_8 391..448 CDD:290566 16/56 (29%)
leucine-rich repeat 414..437 CDD:275380 7/22 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453566
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D299282at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.850

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