DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and 18w

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0004364 Length:1385 Species:Drosophila melanogaster


Alignment Length:1251 Identity:293/1251 - (23%)
Similarity:449/1251 - (35%) Gaps:434/1251 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 YPPCTYNVMCT--CSKSST----DLGIVHCKNVPFPALPRMVNQSKVFMLHMENTGLREIEP-YF 98
            |...|.::.|:  ..:|.|    ||.:..       |..|:..|....:||..     |:.| .|
  Fly    34 YGLTTMDIRCSVRALESGTGTPLDLQVAE-------AAGRLDLQCSQELLHAS-----ELAPGLF 86

  Fly    99 LQSTGMYRLKISGNHLTEIPDDAFTGLERSLWELILPQNDLV-------EIPSKSLRHLQKLRHL 156
            .|...:..|:|....|..:|.:||.|| .||..|.|..::.|       |:..:|.:.|::|..|
  Fly    87 RQLQKLSELRIDACKLQRVPPNAFEGL-MSLKRLTLESHNAVWGPGKTLELHGQSFQGLKELSEL 150

  Fly   157 DLGYNHITHIQHDSFRGLEDSLQTLILREN--------------CISQLMSH---SFSGLLILET 204
            .||.|:|..:....:..: .|||.|.|.:|              |....:|:   :.||...|:|
  Fly   151 HLGDNNIRQLPEGVWCSM-PSLQLLNLTQNRIRSAEFLGFSEKLCAGSALSNANGAVSGGSELQT 214

  Fly   205 LDLSGNNLFEIDPNVFVDGMPRLTRLLLTDNILSEIPYDALGPLKSLRTLDISHNVIWSLSGNET 269
            ||:|.|.|..:........:.||..|.|..|.:|.:..:||..|.|||.|:||:|.:.||..   
  Fly   215 LDVSFNELRSLPDAWGASRLRRLQTLSLQHNNISTLAPNALAGLSSLRVLNISYNHLVSLPS--- 276

  Fly   270 YEIKASTKLNLDNLHLEYNHIEVLPPNSFKYFDTVNRTFFDGNPIHTLREDAFKPARIREIYMRY 334
             |..|..| .|..|||:.|.:..||...                :|.|.:               
  Fly   277 -EAFAGNK-ELRELHLQGNDLYELPKGL----------------LHRLEQ--------------- 308

  Fly   335 CGLTNISPVAFDSLVNSLQILDLSGNNLTKLHHKLFNNFDVLRVISMRDNKIKIQKPTETFNAVH 399
                             |.:||||||.||. ||.              ||        .||..: 
  Fly   309 -----------------LLVLDLSGNQLTS-HHV--------------DN--------STFAGL- 332

  Fly   400 YTLLKLDLSGDRNDPTNLQTLRKMRNMRSLSISRLGSSSVGPEDFKDFGVELEDLQITRASLSGI 464
            ..|:.|:||.:                   :::|:||.:                          
  Fly   333 IRLIVLNLSNN-------------------ALTRIGSKT-------------------------- 352

  Fly   465 QSHAFKHVRGLKRLDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELD 529
                ||.:..|:.||...|.|..||..||                    ||      |.:|..|:
  Fly   353 ----FKELYFLQILDMRNNSIGHIEEGAF--------------------LP------LYNLHTLN 387

  Fly   530 FSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFF 594
            .:.|.:.::.:..|:.|..|..|.|::|.:..|....|:.  .|.|:|:.|..|.||.:.: ...
  Fly   388 LAENRLHTLDNRIFNGLYVLTKLTLNNNLVSIVESQAFRN--CSDLKELDLSSNQLTEVPE-AVQ 449

  Fly   595 DLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPN 659
            ||..|:.|.|.:|:|.:.:...|.||::|..|.|..|:|.|:....||:||:|.:|::|.|::.:
  Fly   450 DLSMLKTLDLGENQISEFKNNTFRNLNQLTGLRLIDNRIGNITVGMFQDLPRLSVLNLAKNRIQS 514

  Fly   660 FNFDYFDQ--------------------VGTLSNLN-VNVSHNQIRQLMYNSSWSGRNEHGGMYH 703
            .....||:                    ..||::|. :|:|.|.:....|           ....
  Fly   515 IERGAFDKNTEIEAIRLDKNFLTDINGIFATLASLLWLNLSENHLVWFDY-----------AFIP 568

  Fly   704 SNIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHEL 768
            ||:|.||:..|.|..:...|....||.:|                        .||.|:|.|.|:
  Fly   569 SNLKWLDIHGNYIEALGNYYKLQEEIRVT------------------------TLDASHNRITEI 609

  Fly   769 DFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVD--------FSHNHLRGLPDNL----- 820
            ...:..|:  ::|:|..:|.:..|..:.|.....|..||        .|.|.||..|.:.     
  Fly   610 GAMSVPNS--IELLFINNNIIGQIQANTFVDKTRLARVDLYANVLSKISLNALRVAPVSAEKPVP 672

  Fly   821 -FYNGG--------MEKLDVSHNMMLK--------------IP---SSSLSSLAALTL------- 852
             ||.||        ||.|...:|:..:              :|   |:.|..||:|:.       
  Fly   673 EFYLGGNPFECDCSMEWLQRINNLTTRQHPHVVDLGNIECLMPHSRSAPLRPLASLSASDFVCKY 737

  Fly   853 -----------------CELHLSNNFISTIHS------------MDLS---NKFRSLRYLDISYN 885
                             ||:....| .|..|.            .||:   |:...    |:|..
  Fly   738 ESHCPPTCHCCEYEQCECEVICPGN-CSCFHDATWATNIVDCGRQDLAALPNRIPQ----DVSDL 797

  Fly   886 YLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFMGLENSLIKLGLENISLSTVPEIRLKYLREF 950
            ||    |.  ..||:|.|..|:..|:|:.:   ::...|.:.   |:|.||:             
  Fly   798 YL----DG--NNMPELEVGHLTGRRNLRAL---YLNASNLMT---LQNGSLA------------- 837

  Fly   951 RLGYNELPSIPQELAHNMSNLRMLDLSNNDLTNVP-LMTQALPHLRRLMLSGNPITSLNNNSFDG 1014
                            .:.|||:|.|.||.||.:. ...::|..||.|.|..|.:|.::|.:|:.
  Fly   838 ----------------QLVNLRVLHLENNKLTALEGTEFRSLGLLRELYLHNNMLTHISNATFEP 886

  Fly  1015 VNEDLEMLDISNFRLHYFEYGCLDSLPHLRSLKLTAYSH-LEHFNIPHLLRHHYNIRQLWIEAPQ 1078
            : ..||:|.:.|.|        |.|||||:      |.| |:...:.         |..|....|
  Fly   887 L-VSLEVLRLDNNR--------LSSLPHLQ------YRHSLQGLTLG---------RNAWSCRCQ 927

  Fly  1079 PFTRIVKKGSG------PTQEMQTLQLGNPTDLQREMEGHLPSKLTNITFSGPQFTNL------- 1130
            ....:.:..|.      ...::..|..|    ::||:|  |...|.|    ||..::|       
  Fly   928 QLRELAQFVSDNAMVVRDAHDIYCLDAG----IKRELE--LIGNLAN----GPDCSDLLDASASN 982

  Fly  1131 ---NERILRGMRSPYL 1143
               ::.:..|.|.|.|
  Fly   983 ISSSQDLAGGYRLPLL 998

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380 6/19 (32%)
LRR_8 102..163 CDD:290566 21/67 (31%)
leucine-rich repeat 104..128 CDD:275380 8/23 (35%)
LRR_RI <128..261 CDD:238064 47/156 (30%)
leucine-rich repeat 129..152 CDD:275380 7/29 (24%)
LRR_8 152..212 CDD:290566 22/76 (29%)
leucine-rich repeat 153..177 CDD:275380 6/23 (26%)
leucine-rich repeat 178..201 CDD:275380 9/39 (23%)
LRR_8 202..261 CDD:290566 23/58 (40%)
leucine-rich repeat 202..226 CDD:275380 7/23 (30%)
leucine-rich repeat 227..250 CDD:275380 8/22 (36%)
leucine-rich repeat 251..279 CDD:275380 11/27 (41%)
leucine-rich repeat 280..326 CDD:275380 9/45 (20%)
LRR_8 326..386 CDD:290566 13/59 (22%)
leucine-rich repeat 327..348 CDD:275380 0/20 (0%)
leucine-rich repeat 352..375 CDD:275380 11/22 (50%)
leucine-rich repeat 376..401 CDD:275380 4/24 (17%)
leucine-rich repeat 426..450 CDD:275378 3/23 (13%)
LRR_RI <448..651 CDD:238064 53/202 (26%)
leucine-rich repeat 451..474 CDD:275380 2/22 (9%)
LRR_8 473..559 CDD:290566 21/85 (25%)
leucine-rich repeat 475..524 CDD:275380 12/48 (25%)
leucine-rich repeat 500..519 CDD:275380 2/18 (11%)
leucine-rich repeat 525..548 CDD:275380 5/22 (23%)
leucine-rich repeat 549..574 CDD:275380 6/24 (25%)
LRR_8 573..633 CDD:290566 21/59 (36%)
leucine-rich repeat 575..598 CDD:275380 8/22 (36%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
LRR_8 622..683 CDD:290566 22/81 (27%)
leucine-rich repeat 623..646 CDD:275380 9/22 (41%)
leucine-rich repeat 647..730 CDD:275380 22/103 (21%)
leucine-rich repeat 648..673 CDD:275380 7/44 (16%)
leucine-rich repeat 674..705 CDD:275380 5/31 (16%)
LRR_8 704..763 CDD:290566 14/58 (24%)
leucine-rich repeat 731..754 CDD:275380 1/22 (5%)
LRR_8 753..813 CDD:290566 17/67 (25%)
leucine-rich repeat 755..778 CDD:275380 7/22 (32%)
leucine-rich repeat 779..802 CDD:275380 5/22 (23%)
leucine-rich repeat 803..823 CDD:275380 9/33 (27%)
leucine-rich repeat 852..876 CDD:275380 8/62 (13%)
LRR_8 854..910 CDD:290566 17/70 (24%)
LRR_RI <877..>1006 CDD:238064 32/129 (25%)
leucine-rich repeat 877..900 CDD:275380 6/22 (27%)
leucine-rich repeat 901..925 CDD:275380 5/23 (22%)
leucine-rich repeat 926..946 CDD:275380 4/19 (21%)
LRR_8 947..1004 CDD:290566 15/57 (26%)
leucine-rich repeat 947..970 CDD:275380 0/22 (0%)
leucine-rich repeat 971..993 CDD:275380 9/22 (41%)
LRR_8 992..1049 CDD:290566 19/56 (34%)
leucine-rich repeat 994..1014 CDD:275380 8/19 (42%)
leucine-rich repeat 1019..1042 CDD:275380 8/22 (36%)
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380 8/29 (28%)
leucine-rich repeat 92..115 CDD:275380 8/23 (35%)
LRR_8 115..181 CDD:290566 20/66 (30%)
leucine-rich repeat 116..146 CDD:275380 7/29 (24%)
leucine-rich repeat 147..170 CDD:275380 6/23 (26%)
leucine-rich repeat 171..201 CDD:275380 6/29 (21%)
LRR_RI 210..464 CDD:238064 97/408 (24%)
leucine-rich repeat 212..236 CDD:275380 7/23 (30%)
LRR_8 235..295 CDD:290566 26/64 (41%)
leucine-rich repeat 237..260 CDD:275380 8/22 (36%)
leucine-rich repeat 261..284 CDD:275380 11/27 (41%)
LRR_8 283..345 CDD:290566 29/153 (19%)
leucine-rich repeat 285..308 CDD:275380 9/38 (24%)
leucine-rich repeat 309..334 CDD:275380 15/48 (31%)
LRR_8 334..393 CDD:290566 24/133 (18%)
leucine-rich repeat 335..358 CDD:275380 9/71 (13%)
leucine-rich repeat 359..382 CDD:275380 12/48 (25%)
LRR_8 382..441 CDD:290566 16/60 (27%)
leucine-rich repeat 383..406 CDD:275380 5/22 (23%)
leucine-rich repeat 407..430 CDD:275380 6/24 (25%)
LRR_8 431..488 CDD:290566 20/57 (35%)
leucine-rich repeat 431..451 CDD:275380 6/20 (30%)
leucine-rich repeat 454..477 CDD:275380 8/22 (36%)
LRR_8 477..559 CDD:290566 22/81 (27%)
leucine-rich repeat 478..499 CDD:275380 8/20 (40%)
leucine-rich repeat 502..525 CDD:275380 6/22 (27%)
leucine-rich repeat 526..548 CDD:275380 2/21 (10%)
leucine-rich repeat 590..617 CDD:275380 9/50 (18%)
leucine-rich repeat 618..641 CDD:275380 5/22 (23%)
leucine-rich repeat 642..689 CDD:275380 13/46 (28%)
LRRCT 679..736 CDD:214507 10/56 (18%)
leucine-rich repeat 775..796 CDD:275380 4/24 (17%)
LRR_8 797..852 CDD:290566 22/95 (23%)
leucine-rich repeat 797..817 CDD:275380 8/25 (32%)
leucine-rich repeat 818..841 CDD:275380 6/57 (11%)
LRR_8 841..900 CDD:290566 23/67 (34%)
leucine-rich repeat 842..865 CDD:275380 9/22 (41%)
LRR_4 866..907 CDD:289563 18/49 (37%)
leucine-rich repeat 866..889 CDD:275380 8/23 (35%)
leucine-rich repeat 890..911 CDD:275380 12/34 (35%)
TIR 1045..1183 CDD:214587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453747
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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