DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and CG4168

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster


Alignment Length:1302 Identity:340/1302 - (26%)
Similarity:573/1302 - (44%) Gaps:203/1302 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ASMFDREMEETHYPPCTYNVMCTCS---KSSTDLGIVHCKNVPFPALPRMVNQSKVFMLHMENTG 90
            |::...:.::..| .|..|.||.|:   ..::.|..::|..|.....|..:: |.|..:.|.||.
  Fly    46 AALLGSQQQDILY-ACPLNSMCQCAGLPNETSTLIEINCNEVALYKFPEFMH-SSVRYIEMSNTH 108

  Fly    91 LREIEPYFLQSTGMYRLKISGNHLTEIPDDAFTGLERSLWELILPQNDLVEIPSKSLRHLQKLRH 155
            |:.::....|...:..||:..|.|.:|.:.:|:.:..||..|.:..|.:..:|..:|:.|..|..
  Fly   109 LQSVDDETFQGLRLKTLKLIDNELQDISERSFSTMTHSLMTLDISGNKMQHLPLDALQRLHSLSR 173

  Fly   156 LDLGYNHITHI------QHDSFRGLEDS-------------------------------LQTLIL 183
            |....||||.:      |||:.|.|..|                               :||.:.
  Fly   174 LVAQRNHITTLDGNWDAQHDTLRSLHLSDNDITEVAPGGGSIEVVSQNDNSSQPSSLAAVQTRLE 238

  Fly   184 RENCISQLMSHS---------FSGLLILETLDLSGNNLFEIDPNVFVDGMPR-LTRLLLTDNILS 238
            ..|.|......|         |..|..|..||||.|.::.:..|.    :|| |..:.|:.|:|:
  Fly   239 TSNSIYPPSPSSGDRTTGGRPFEQLQKLLWLDLSNNRIYHVAGNY----LPRSLVTMDLSSNLLT 299

  Fly   239 EIPYDALGPLKSLRTLDISHNVIWSLSGNETYEIKASTKLNLDNLHLEYNHIEVLPPNSFK--YF 301
            ..|......|..||.:.:..|:|.|:...| .::: ..:::|:.|.|..|.||.|..:.|:  |.
  Fly   300 VFPQQLFEQLPELRIVSLRDNLIRSVQWKE-LQVR-PLRMHLERLDLGQNCIENLESDYFQQNYS 362

  Fly   302 DTVNRTF-FDGNPIHTLREDAFKPARIREIYMRYCGLTNISPVAFDSLVNSLQILDLSGNNLT-- 363
            |...|.. .:.|.:..|.|..||...|..:.:.:..::.:.|.||:.|..:|:.|||..|.||  
  Fly   363 DVHLRALNLEQNFVTQLPEAVFKATGIAHLVLAFNAISRVHPSAFEGLTETLEYLDLERNRLTTV 427

  Fly   364 -----KLHHKLFNNFDVLRVISMRDNKIKIQKPTETFNAVHYT--LLKLDLSGDRNDPTNLQTLR 421
                 .|||        |:.:.:..|:|     ::..|...:|  |..|.|||  |:.:.:..| 
  Fly   428 PVALSSLHH--------LKYLYLTSNQI-----SQLNNLPSFTENLRVLSLSG--NNFSMIPVL- 476

  Fly   422 KMRNMRSLSISRLGSSSVG--PEDF---KDFGVELEDLQITRASLSGIQSHAFKHVRGLKRLDFS 481
            .::|...||...:|.:|:.  ||..   ..:|..|:.:.:....::.:...:|..:..::.:..|
  Fly   477 GLKNYTQLSYLNMGYNSITDIPEGIFAVDSWGSNLQTILLRNNKITHLHLGSFAGLEQIQEISLS 541

  Fly   482 ENGISSIENDAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELD------------FSNNH 534
            .|.|:......|..:..:|..|::|       ....|.|.|.||..||            ..||:
  Fly   542 FNDITIHHPLVFENVSRTLKILELS-------FAVFPARSLESLDPLDALLPLSQLIWLGLDNNN 599

  Fly   535 ISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLEAL 599
            :..:|:.||..::.|..:.|..|:::.:.:|.||.|.||.|.||.|.:|.|..:...||..|..|
  Fly   600 LKQVSNESFAQMRELSYINLSFNQLKTLPRGLFQSDAHSHLVEIDLSYNGLERLEAQTFHSLGDL 664

  Fly   600 RKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDY 664
            :.|:|..|::..|.|.||.||:.|.||.|..|::.|::..:|..||.|..||:..|||.:.:...
  Fly   665 QTLNLQSNRLRTIARHAFHNLEFLRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCSLSLKS 729

  Fly   665 FDQV-GTLSNLNVNVSHNQIRQLMYN--SSWSGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRP 726
            |..| .|.:.|.:|||||.|.. .|:  ||:        ||   |..||:|||:::  ....|..
  Fly   730 FLYVSNTTTPLRLNVSHNHIAS-FYDELSSY--------MY---IYQLDISHNHVT--KSDSFTN 780

  Fly   727 AEISLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSD 791
            ...:|..|:|.:|.|.:.....||::..|:.|::::|.:..|...:|:....||.:...||.|..
  Fly   781 LANTLRFLNLAHNQLGSLQSHAFGDLEFLEILNVAHNNLTSLRRRSFQGLNSLQELDLSHNQLDQ 845

  Fly   792 IPQDIFKPVQGLRIVDFSHNHLRGLPDNLFYNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELH 856
            :..:.|..::.|||:..:.|.||.||..:|.|..:|.||::.|.:...|..:.:.: ..||..:.
  Fly   846 LQVEQFSNLRKLRILRINSNRLRALPREVFMNTRLEFLDIAENQLSVWPVPAFTDI-GFTLRSIQ 909

  Fly   857 LSNNFISTIH-SMDLSNKFRSLRYLDISYNYLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFM 920
            :|:|.:..:. ||.::::|  |..:.::.|.:..:.|..|:.:..|..||||.|..:....:...
  Fly   910 MSHNNLEYLDASMFINSQF--LYDISLARNRITILPDNTFSFLNNLTNLDLSQNPLVTTNLREVF 972

  Fly   921 GLENSLIKLGLENISLSTVPEIRLKYLREFRLGYNELPSIPQELA--HNMSNLRMLDLSNNDLTN 983
            .....|.||.|.::.|..:|.::|..|....:..|.|    |||:  .::.:||.:::|:|.|||
  Fly   973 VHTPRLRKLSLHHMGLYVLPPLKLPLLSYLDVSGNYL----QELSPLGSLRHLRHVNVSHNKLTN 1033

  Fly   984 VPLMTQAL-PHLRRLMLSGNPITSLNNNSFDGVNEDLEMLDISNFRLHYFEYGCLD-------SL 1040
            .....:.| |.:|.|.|:.||:..:.            :.|:::.| |..|...||       :.
  Fly  1034 ASCAAEHLPPSVRVLDLAHNPLRRIT------------LHDLASLR-HLAELNILDVKVTNPQAF 1085

  Fly  1041 PHLRSL-KLTAYSHLEHFNIPHLLRHHYNIRQLWIEAPQPFTRIVKKGSGPTQEMQTLQLGNPTD 1104
            ..|||| ||.|.||.   |:..::.....::||.:...:|          ...:....:|.|.|.
  Fly  1086 SKLRSLRKLHASSHA---NLGEIVARIPGLQQLRVHCLEP----------NIGQQLFAKLANNTK 1137

  Fly  1105 LQ-REMEGHLPSKLTNITFSGPQ-FTNLNERILRGMRSPYLYMQLFNTSLQALPPNFFKYMGRVR 1167
            :: .|:.|      :|:....|. ||.|:       ||..|.:::.:|.:..|||..|..:..|.
  Fly  1138 IRLLELYG------SNVQTIAPDVFTGLS-------RSQRLQVKISHTRISDLPPGIFYALREVP 1189

  Fly  1168 NISLDIRYHNRNLKKIPNPNTGAVPYLPNSVF---------LTDLKMSHTDLNCDCDLGWVEFWQ 1223
            ::|:||.::..|.       ..|..:.||..:         :..|..||..|.|:|.|.|...|.
  Fly  1190 HLSIDISHNRINA-------LAADSFYPNKSYWDAVGTRSIMGGLITSHNPLECECGLVWFGHWL 1247

  Fly  1224 RK 1225
            |:
  Fly  1248 RR 1249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380 5/18 (28%)
LRR_8 102..163 CDD:290566 16/60 (27%)
leucine-rich repeat 104..128 CDD:275380 6/23 (26%)
LRR_RI <128..261 CDD:238064 44/179 (25%)
leucine-rich repeat 129..152 CDD:275380 6/22 (27%)
LRR_8 152..212 CDD:290566 25/105 (24%)
leucine-rich repeat 153..177 CDD:275380 11/29 (38%)
leucine-rich repeat 178..201 CDD:275380 7/31 (23%)
LRR_8 202..261 CDD:290566 18/59 (31%)
leucine-rich repeat 202..226 CDD:275380 7/23 (30%)
leucine-rich repeat 227..250 CDD:275380 6/22 (27%)
leucine-rich repeat 251..279 CDD:275380 6/27 (22%)
leucine-rich repeat 280..326 CDD:275380 16/48 (33%)
LRR_8 326..386 CDD:290566 17/66 (26%)
leucine-rich repeat 327..348 CDD:275380 4/20 (20%)
leucine-rich repeat 352..375 CDD:275380 10/29 (34%)
leucine-rich repeat 376..401 CDD:275380 4/24 (17%)
leucine-rich repeat 426..450 CDD:275378 7/28 (25%)
LRR_RI <448..651 CDD:238064 60/214 (28%)
leucine-rich repeat 451..474 CDD:275380 2/22 (9%)
LRR_8 473..559 CDD:290566 22/97 (23%)
leucine-rich repeat 475..524 CDD:275380 10/48 (21%)
leucine-rich repeat 500..519 CDD:275380 3/18 (17%)
leucine-rich repeat 525..548 CDD:275380 8/34 (24%)
leucine-rich repeat 549..574 CDD:275380 8/24 (33%)
LRR_8 573..633 CDD:290566 25/59 (42%)
leucine-rich repeat 575..598 CDD:275380 9/22 (41%)
leucine-rich repeat 599..622 CDD:275380 10/22 (45%)
LRR_8 622..683 CDD:290566 24/61 (39%)
leucine-rich repeat 623..646 CDD:275380 8/22 (36%)
leucine-rich repeat 647..730 CDD:275380 28/85 (33%)
leucine-rich repeat 648..673 CDD:275380 8/25 (32%)
leucine-rich repeat 674..705 CDD:275380 12/32 (38%)
LRR_8 704..763 CDD:290566 16/58 (28%)
leucine-rich repeat 731..754 CDD:275380 7/22 (32%)
LRR_8 753..813 CDD:290566 15/59 (25%)
leucine-rich repeat 755..778 CDD:275380 5/22 (23%)
leucine-rich repeat 779..802 CDD:275380 6/22 (27%)
leucine-rich repeat 803..823 CDD:275380 9/19 (47%)
leucine-rich repeat 852..876 CDD:275380 6/24 (25%)
LRR_8 854..910 CDD:290566 14/56 (25%)
LRR_RI <877..>1006 CDD:238064 37/131 (28%)
leucine-rich repeat 877..900 CDD:275380 4/22 (18%)
leucine-rich repeat 901..925 CDD:275380 6/23 (26%)
leucine-rich repeat 926..946 CDD:275380 7/19 (37%)
LRR_8 947..1004 CDD:290566 19/59 (32%)
leucine-rich repeat 947..970 CDD:275380 6/24 (25%)
leucine-rich repeat 971..993 CDD:275380 8/22 (36%)
LRR_8 992..1049 CDD:290566 17/64 (27%)
leucine-rich repeat 994..1014 CDD:275380 5/19 (26%)
leucine-rich repeat 1019..1042 CDD:275380 6/29 (21%)
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380 5/18 (28%)
LRR_8 121..181 CDD:290566 16/59 (27%)
LRR_RI 122..350 CDD:238064 57/233 (24%)
leucine-rich repeat 122..146 CDD:275380 6/23 (26%)
leucine-rich repeat 147..170 CDD:275380 6/22 (27%)
leucine-rich repeat 171..194 CDD:275380 8/22 (36%)
leucine-rich repeat 195..214 CDD:275380 3/18 (17%)
leucine-rich repeat 215..236 CDD:275380 1/20 (5%)
LRR_8 265..322 CDD:290566 18/60 (30%)
leucine-rich repeat 266..287 CDD:275380 8/24 (33%)
leucine-rich repeat 288..311 CDD:275380 6/22 (27%)
leucine-rich repeat 312..338 CDD:275380 6/27 (22%)
LRR_RI 315..546 CDD:238064 59/248 (24%)
leucine-rich repeat 339..365 CDD:275380 10/25 (40%)
LRR_8 365..424 CDD:290566 16/58 (28%)
leucine-rich repeat 366..388 CDD:275380 6/21 (29%)
leucine-rich repeat 389..412 CDD:275380 5/22 (23%)
LRR_8 413..470 CDD:290566 21/71 (30%)
leucine-rich repeat 414..436 CDD:275380 8/21 (38%)
leucine-rich repeat 437..459 CDD:275380 5/26 (19%)
leucine-rich repeat 460..483 CDD:275380 8/25 (32%)
LRR_8 482..545 CDD:290566 11/62 (18%)
leucine-rich repeat 484..510 CDD:275380 7/25 (28%)
leucine-rich repeat 511..534 CDD:275380 2/22 (9%)
leucine-rich repeat 535..589 CDD:275380 14/60 (23%)
LRR_RI 588..891 CDD:238064 102/316 (32%)
LRR_8 588..650 CDD:290566 19/61 (31%)
leucine-rich repeat 590..613 CDD:275380 5/22 (23%)
leucine-rich repeat 614..639 CDD:275380 8/24 (33%)
LRR_8 638..698 CDD:290566 25/59 (42%)
leucine-rich repeat 640..663 CDD:275380 9/22 (41%)
leucine-rich repeat 664..687 CDD:275380 10/22 (45%)
LRR_8 688..749 CDD:290566 24/60 (40%)
leucine-rich repeat 688..711 CDD:275380 8/22 (36%)
leucine-rich repeat 712..735 CDD:275380 8/22 (36%)
leucine-rich repeat 740..783 CDD:275380 19/56 (34%)
LRR_8 784..843 CDD:290566 16/58 (28%)
leucine-rich repeat 785..808 CDD:275380 7/22 (32%)
leucine-rich repeat 809..832 CDD:275380 5/22 (23%)
LRR_RI <827..1053 CDD:238064 64/232 (28%)
LRR_8 832..890 CDD:290566 20/57 (35%)
leucine-rich repeat 833..856 CDD:275380 6/22 (27%)
leucine-rich repeat 857..879 CDD:275380 10/21 (48%)
leucine-rich repeat 880..900 CDD:275380 5/19 (26%)
LRR_8 904..963 CDD:290566 17/60 (28%)
leucine-rich repeat 905..928 CDD:275380 5/22 (23%)
leucine-rich repeat 929..952 CDD:275380 4/22 (18%)
leucine-rich repeat 953..977 CDD:275380 6/23 (26%)
leucine-rich repeat 978..1020 CDD:275380 13/45 (29%)
LRR_8 1019..1074 CDD:290566 18/67 (27%)
leucine-rich repeat 1045..1068 CDD:275380 7/35 (20%)
leucine-rich repeat 1069..1090 CDD:275380 4/20 (20%)
leucine-rich repeat 1091..1114 CDD:275380 7/25 (28%)
leucine-rich repeat 1115..1161 CDD:275380 12/68 (18%)
leucine-rich repeat 1162..1190 CDD:275380 8/27 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453634
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BFMX
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 118 1.000 Inparanoid score I2000
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D299282at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.800

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