DRSC/TRiP Functional Genomics Resources

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Protein Alignment chp and CG42346

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster


Alignment Length:1187 Identity:288/1187 - (24%)
Similarity:488/1187 - (41%) Gaps:221/1187 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 EMEETHYPPCTYNVMCTCSKSSTDLGIVHCK--NVPFPALPRMVNQSKVFMLHMENTGLREIEPY 97
            :...:|......|.:.....|...|.||:.|  .:|..||..|   .|:..|..:...:..::.|
  Fly   306 QFSHSHLEALKDNSLRNVRSSLESLSIVNGKLTQMPSRALSSM---QKLTALDFDYNEIVRVDDY 367

  Fly    98 FLQSTGMYRLKISGNHLTEIPDDAFTGLERSLWELILPQNDLVEIPSKSLRHLQKLR-------- 154
            ......:.:|.:.||.|..:|:.||.|||..:.|:.:.:|.|...|..:||.|..||        
  Fly   368 SFYGLRISKLNMKGNRLQGMPEHAFAGLEECMQEIDVSENGLRTFPLMALRKLDHLRILRLSNNR 432

  Fly   155 -------------------------------HLDLGYNHITHIQHDSFRGLEDSLQTLILRENCI 188
                                           .|||..|....|..|.||.. ..|:||....|.|
  Fly   433 IPTFYGDIQLATNNASAAAAAVGAFQLPSLIFLDLSSNQFAEIGPDCFRAF-PQLKTLSFYANQI 496

  Fly   189 SQLMSHSFSGLLILETLDLSGNNLFEIDPNVF--------VD--------------GMPRLTRLL 231
            ..:...:|..|..|.:||:|.|.:..:||.||        ||              .:|:|..:.
  Fly   497 ELVQPEAFKSLRELMSLDMSHNRIIGLDPKVFEKNKRLQTVDLSHNHIHTIGGVFSNLPQLREVF 561

  Fly   232 LTDNILSEIPYDALGPLKSLRTLDISHNVIWSLSGNETYEIKASTKLNLDNLHLEYNHIEVLPPN 296
            |::|.:.|:|.||.....::..:.:..|.|..:..|     ..||.:|||:|:|..|.|.:||..
  Fly   562 LSENNILELPADAFTNSTNVDVIYLESNAIAHIDPN-----VFSTLVNLDHLYLRSNFIPLLPVT 621

  Fly   297 SFKYFDTVNRTFFDGNPIHTLREDAF-KPARIREIYMRYCGLTNISPVAFDSLVNSLQILDLSGN 360
            .|.....:.....|.|.|..|....| |...:||:.:....:..:....|:.| .|||.|.:..|
  Fly   622 LFDKSTKLTSLSLDNNEIQDLEIGMFRKLEHLREVRLHNNRIRRVRRGVFEPL-PSLQELHIQKN 685

  Fly   361 NLTKLHHKLFNNFDVLRVISMRDNKIKIQKPTETFNAVHYTLLKLDLSGDRNDPTNLQTLRKMRN 425
            ::..:..:.|:..:.::.|:::||::.:.:  :.|...:.:||.:.|..:.....:.:|..:.:.
  Fly   686 SIEDIEPQAFHTLENMQHINLQDNQLTVLE--DIFPDENSSLLSVQLEANYLHKVHPRTFSRQQK 748

  Fly   426 MRSLSISRLGSSSVGPEDFKDFGVELEDLQITRASLSGIQSHAFKHVRGLKRLDFSENGISSIEN 490
            ::.:                    .|:|.|:||     ::...|.....|.||..|:|.|..||.
  Fly   749 VQIM--------------------WLKDNQLTR-----VERSFFADTPQLGRLYLSDNKIRDIEK 788

  Fly   491 DAFHEI---------GHSLISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTSFHFL 546
            |.|..:         |:.|..|:..:           ...|..|:||..:.|||.::...:|..|
  Fly   789 DTFVNLLLLQFLDLSGNQLRQLRRDY-----------FAPLQDLEELSLARNHIEAIEGYAFAKL 842

  Fly   547 KNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDK 611
            |||:.|:|..|.:.|:.:..|..:.                          .|..|:|.:..:.|
  Fly   843 KNLKSLDLSHNPLVQLTRDIFSNEF--------------------------PLNSLNLGNCSLRK 881

  Fly   612 IERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDYFDQVG------- 669
            :|:.||.:|..|..|:|..|::|. ||....::|.|..|.::.|     ||.|...||       
  Fly   882 LEQHAFKSLTNLNELNLERNQLNP-ADIQTLDIPNLRRLLLSHN-----NFSYAGSVGIMAGMLD 940

  Fly   670 ---TLSNLNV-NVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRPAEIS 730
               :|..|:: |.|..||..|::..            ::|:..|||..|.::.|:...|....: 
  Fly   941 RLRSLQQLSMSNCSLGQIPDLLFAK------------NTNLVRLDLCDNRLTQINRNIFSGLNV- 992

  Fly   731 LTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQD 795
            ...|.|..|.|.:.......|:..|:.|||:.|.:..:||.....|..|:.:....|.::.:...
  Fly   993 FKELRLCRNELSDFPHIALYNLSTLESLDLARNQLASIDFFKLSGTLNLRQLILRDNKITALSGF 1057

  Fly   796 IFKPVQGLRIVDFSHNHLRGLPDN-LFYNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLSN 859
            ....:..|..||.|.|.|..||.| |.::..::|:.:|:|..|:||||:||.::...|..|:|:.
  Fly  1058 NAVNLTQLDSVDLSGNLLLSLPANFLRHSINLQKVHLSNNRFLQIPSSALSDVSIPRLSWLNLTG 1122

  Fly   860 NFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFMGLEN 924
            |.|:.|:::. ..::..|:.|.|....|..:....|.....|..|.|.:||..::...:|..|.|
  Fly  1123 NPINRIYTVK-EERYPYLKELYICQTNLSILTSKDFEAFQALQHLHLVNNRITRISPGAFKSLTN 1186

  Fly   925 SLIKLGLENISLSTVPEIRLKYLREFR---LGYNELPSIPQELAHNMSNLRMLDLSNNDLTNVPL 986
             |:.|.|....|..:|:.||:.||..|   :.:|.|..: :|.:.::..::.||||.|.|..:..
  Fly  1187 -LLTLDLSVNELEMLPKERLQGLRLLRFLNISHNTLKDL-EEFSVDLLEMQTLDLSFNQLDRISK 1249

  Fly   987 MT-QALPHLRRLMLSGNPITSLNNNSFDGVNEDLEMLDISNFRLHYFEYGCLDSL----PHLRSL 1046
            .| :.|..|..|.|.||.:|.|:|::|    ..|..|.:.:.|.:|||...|:.|    .:||:|
  Fly  1250 KTFRNLHGLLELFLMGNRMTVLSNDAF----RFLRKLHVLDLRKNYFELVPLEPLRPLETNLRTL 1310

  Fly  1047 KL---TAYSHLEHFNIPHLLRHHYNIRQLWIEAPQPFTRIVKKGSGPTQ------------EMQT 1096
            :|   ..:...:...:...||.|    :.|         .:..|||..:            .:..
  Fly  1311 RLEENPLHCSCDAQKLWEWLRDH----RKW---------SLSMGSGAGRGIGGLTGGLGGDSINY 1362

  Fly  1097 LQLGNPTDLQREMEGHL 1113
            |:..:||:|:.::.|.:
  Fly  1363 LRCEHPTELRGKVFGRM 1379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380 2/18 (11%)
LRR_8 102..163 CDD:290566 23/99 (23%)
leucine-rich repeat 104..128 CDD:275380 10/23 (43%)
LRR_RI <128..261 CDD:238064 44/193 (23%)
leucine-rich repeat 129..152 CDD:275380 7/22 (32%)
LRR_8 152..212 CDD:290566 22/98 (22%)
leucine-rich repeat 153..177 CDD:275380 10/62 (16%)
leucine-rich repeat 178..201 CDD:275380 7/22 (32%)
LRR_8 202..261 CDD:290566 20/80 (25%)
leucine-rich repeat 202..226 CDD:275380 11/45 (24%)
leucine-rich repeat 227..250 CDD:275380 7/22 (32%)
leucine-rich repeat 251..279 CDD:275380 5/27 (19%)
leucine-rich repeat 280..326 CDD:275380 15/46 (33%)
LRR_8 326..386 CDD:290566 13/59 (22%)
leucine-rich repeat 327..348 CDD:275380 3/20 (15%)
leucine-rich repeat 352..375 CDD:275380 5/22 (23%)
leucine-rich repeat 376..401 CDD:275380 4/24 (17%)
leucine-rich repeat 426..450 CDD:275378 0/23 (0%)
LRR_RI <448..651 CDD:238064 53/211 (25%)
leucine-rich repeat 451..474 CDD:275380 6/22 (27%)
LRR_8 473..559 CDD:290566 28/94 (30%)
leucine-rich repeat 475..524 CDD:275380 14/57 (25%)
leucine-rich repeat 500..519 CDD:275380 2/18 (11%)
leucine-rich repeat 525..548 CDD:275380 8/22 (36%)
leucine-rich repeat 549..574 CDD:275380 6/24 (25%)
LRR_8 573..633 CDD:290566 12/59 (20%)
leucine-rich repeat 575..598 CDD:275380 0/22 (0%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
LRR_8 622..683 CDD:290566 20/71 (28%)
leucine-rich repeat 623..646 CDD:275380 7/22 (32%)
leucine-rich repeat 647..730 CDD:275380 22/93 (24%)
leucine-rich repeat 648..673 CDD:275380 8/34 (24%)
leucine-rich repeat 674..705 CDD:275380 6/31 (19%)
LRR_8 704..763 CDD:290566 16/58 (28%)
leucine-rich repeat 731..754 CDD:275380 5/22 (23%)
LRR_8 753..813 CDD:290566 15/59 (25%)
leucine-rich repeat 755..778 CDD:275380 8/22 (36%)
leucine-rich repeat 779..802 CDD:275380 2/22 (9%)
leucine-rich repeat 803..823 CDD:275380 10/20 (50%)
leucine-rich repeat 852..876 CDD:275380 6/23 (26%)
LRR_8 854..910 CDD:290566 13/55 (24%)
LRR_RI <877..>1006 CDD:238064 39/132 (30%)
leucine-rich repeat 877..900 CDD:275380 5/22 (23%)
leucine-rich repeat 901..925 CDD:275380 7/23 (30%)
leucine-rich repeat 926..946 CDD:275380 7/19 (37%)
LRR_8 947..1004 CDD:290566 19/60 (32%)
leucine-rich repeat 947..970 CDD:275380 6/25 (24%)
leucine-rich repeat 971..993 CDD:275380 8/22 (36%)
LRR_8 992..1049 CDD:290566 21/63 (33%)
leucine-rich repeat 994..1014 CDD:275380 9/19 (47%)
leucine-rich repeat 1019..1042 CDD:275380 8/26 (31%)
CG42346NP_001036303.2 leucine-rich repeat 303..325 CDD:275380 2/18 (11%)
LRR_8 325..384 CDD:290566 15/61 (25%)
leucine-rich repeat 327..350 CDD:275380 8/25 (32%)
leucine-rich repeat 351..461 CDD:275380 21/109 (19%)
LRR_8 373..433 CDD:290566 19/59 (32%)
LRR_RI 397..648 CDD:238064 62/256 (24%)
leucine-rich repeat 399..422 CDD:275380 7/22 (32%)
leucine-rich repeat 462..485 CDD:275380 8/23 (35%)
LRR_8 465..520 CDD:290566 20/55 (36%)
leucine-rich repeat 486..509 CDD:275380 7/22 (32%)
LRR_8 508..567 CDD:290566 15/58 (26%)
leucine-rich repeat 510..533 CDD:275380 9/22 (41%)
LRR_RI 527..785 CDD:238064 63/290 (22%)
leucine-rich repeat 534..556 CDD:275380 2/21 (10%)
LRR_8 555..613 CDD:290566 18/62 (29%)
leucine-rich repeat 557..580 CDD:275380 7/22 (32%)
leucine-rich repeat 581..604 CDD:275380 5/27 (19%)
LRR_8 604..663 CDD:290566 18/58 (31%)
leucine-rich repeat 605..628 CDD:275380 9/22 (41%)
leucine-rich repeat 629..652 CDD:275380 6/22 (27%)
LRR_8 652..711 CDD:290566 13/59 (22%)
leucine-rich repeat 653..676 CDD:275380 4/23 (17%)
leucine-rich repeat 677..700 CDD:275380 5/22 (23%)
leucine-rich repeat 701..748 CDD:275380 8/48 (17%)
leucine-rich repeat 725..736 CDD:275378 3/10 (30%)
leucine-rich repeat 749..772 CDD:275380 6/47 (13%)
LRR_8 771..831 CDD:290566 18/70 (26%)
leucine-rich repeat 773..793 CDD:275380 10/19 (53%)
LRR_RI 804..1076 CDD:238064 78/327 (24%)
LRR_8 821..903 CDD:290566 28/107 (26%)
leucine-rich repeat 821..844 CDD:275380 8/22 (36%)
leucine-rich repeat 845..868 CDD:275380 6/48 (13%)
leucine-rich repeat 869..892 CDD:275380 8/22 (36%)
leucine-rich repeat 893..915 CDD:275380 7/22 (32%)
leucine-rich repeat 916..944 CDD:275380 8/32 (25%)
leucine-rich repeat 945..968 CDD:275380 7/34 (21%)
LRR_8 967..1027 CDD:290566 17/60 (28%)
leucine-rich repeat 969..992 CDD:275380 6/22 (27%)
leucine-rich repeat 993..1014 CDD:275380 4/20 (20%)
LRR_8 1015..1075 CDD:290566 15/59 (25%)
leucine-rich repeat 1017..1040 CDD:275380 8/22 (36%)
leucine-rich repeat 1041..1064 CDD:275380 2/22 (9%)
LRR_RI <1047..1244 CDD:238064 58/199 (29%)
LRR_8 1063..1125 CDD:290566 24/61 (39%)
leucine-rich repeat 1089..1114 CDD:275380 10/24 (42%)
leucine-rich repeat 1115..1162 CDD:275380 11/47 (23%)
LRR_8 1163..1219 CDD:290566 18/56 (32%)
leucine-rich repeat 1163..1186 CDD:275380 7/22 (32%)
leucine-rich repeat 1187..1210 CDD:275380 8/22 (36%)
leucine-rich repeat 1211..1233 CDD:275380 4/22 (18%)
leucine-rich repeat 1234..1257 CDD:275380 8/22 (36%)
LRR_8 1235..1292 CDD:290566 20/60 (33%)
leucine-rich repeat 1258..1279 CDD:275380 9/24 (38%)
leucine-rich repeat 1282..1306 CDD:275380 7/23 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453701
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm42484
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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