DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and CG42346

DIOPT Version :10

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster


Alignment Length:1187 Identity:288/1187 - (24%)
Similarity:488/1187 - (41%) Gaps:221/1187 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 EMEETHYPPCTYNVMCTCSKSSTDLGIVHCK--NVPFPALPRMVNQSKVFMLHMENTGLREIEPY 97
            :...:|......|.:.....|...|.||:.|  .:|..||..|   .|:..|..:...:..::.|
  Fly   306 QFSHSHLEALKDNSLRNVRSSLESLSIVNGKLTQMPSRALSSM---QKLTALDFDYNEIVRVDDY 367

  Fly    98 FLQSTGMYRLKISGNHLTEIPDDAFTGLERSLWELILPQNDLVEIPSKSLRHLQKLR-------- 154
            ......:.:|.:.||.|..:|:.||.|||..:.|:.:.:|.|...|..:||.|..||        
  Fly   368 SFYGLRISKLNMKGNRLQGMPEHAFAGLEECMQEIDVSENGLRTFPLMALRKLDHLRILRLSNNR 432

  Fly   155 -------------------------------HLDLGYNHITHIQHDSFRGLEDSLQTLILRENCI 188
                                           .|||..|....|..|.||.. ..|:||....|.|
  Fly   433 IPTFYGDIQLATNNASAAAAAVGAFQLPSLIFLDLSSNQFAEIGPDCFRAF-PQLKTLSFYANQI 496

  Fly   189 SQLMSHSFSGLLILETLDLSGNNLFEIDPNVF--------VD--------------GMPRLTRLL 231
            ..:...:|..|..|.:||:|.|.:..:||.||        ||              .:|:|..:.
  Fly   497 ELVQPEAFKSLRELMSLDMSHNRIIGLDPKVFEKNKRLQTVDLSHNHIHTIGGVFSNLPQLREVF 561

  Fly   232 LTDNILSEIPYDALGPLKSLRTLDISHNVIWSLSGNETYEIKASTKLNLDNLHLEYNHIEVLPPN 296
            |::|.:.|:|.||.....::..:.:..|.|..:..|     ..||.:|||:|:|..|.|.:||..
  Fly   562 LSENNILELPADAFTNSTNVDVIYLESNAIAHIDPN-----VFSTLVNLDHLYLRSNFIPLLPVT 621

  Fly   297 SFKYFDTVNRTFFDGNPIHTLREDAF-KPARIREIYMRYCGLTNISPVAFDSLVNSLQILDLSGN 360
            .|.....:.....|.|.|..|....| |...:||:.:....:..:....|:.| .|||.|.:..|
  Fly   622 LFDKSTKLTSLSLDNNEIQDLEIGMFRKLEHLREVRLHNNRIRRVRRGVFEPL-PSLQELHIQKN 685

  Fly   361 NLTKLHHKLFNNFDVLRVISMRDNKIKIQKPTETFNAVHYTLLKLDLSGDRNDPTNLQTLRKMRN 425
            ::..:..:.|:..:.::.|:::||::.:.:  :.|...:.:||.:.|..:.....:.:|..:.:.
  Fly   686 SIEDIEPQAFHTLENMQHINLQDNQLTVLE--DIFPDENSSLLSVQLEANYLHKVHPRTFSRQQK 748

  Fly   426 MRSLSISRLGSSSVGPEDFKDFGVELEDLQITRASLSGIQSHAFKHVRGLKRLDFSENGISSIEN 490
            ::.:                    .|:|.|:||     ::...|.....|.||..|:|.|..||.
  Fly   749 VQIM--------------------WLKDNQLTR-----VERSFFADTPQLGRLYLSDNKIRDIEK 788

  Fly   491 DAFHEI---------GHSLISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTSFHFL 546
            |.|..:         |:.|..|:..:           ...|..|:||..:.|||.::...:|..|
  Fly   789 DTFVNLLLLQFLDLSGNQLRQLRRDY-----------FAPLQDLEELSLARNHIEAIEGYAFAKL 842

  Fly   547 KNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDK 611
            |||:.|:|..|.:.|:.:..|..:.                          .|..|:|.:..:.|
  Fly   843 KNLKSLDLSHNPLVQLTRDIFSNEF--------------------------PLNSLNLGNCSLRK 881

  Fly   612 IERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDYFDQVG------- 669
            :|:.||.:|..|..|:|..|::|. ||....::|.|..|.::.|     ||.|...||       
  Fly   882 LEQHAFKSLTNLNELNLERNQLNP-ADIQTLDIPNLRRLLLSHN-----NFSYAGSVGIMAGMLD 940

  Fly   670 ---TLSNLNV-NVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRPAEIS 730
               :|..|:: |.|..||..|::..            ::|:..|||..|.::.|:...|....: 
  Fly   941 RLRSLQQLSMSNCSLGQIPDLLFAK------------NTNLVRLDLCDNRLTQINRNIFSGLNV- 992

  Fly   731 LTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQD 795
            ...|.|..|.|.:.......|:..|:.|||:.|.:..:||.....|..|:.:....|.::.:...
  Fly   993 FKELRLCRNELSDFPHIALYNLSTLESLDLARNQLASIDFFKLSGTLNLRQLILRDNKITALSGF 1057

  Fly   796 IFKPVQGLRIVDFSHNHLRGLPDN-LFYNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLSN 859
            ....:..|..||.|.|.|..||.| |.::..::|:.:|:|..|:||||:||.::...|..|:|:.
  Fly  1058 NAVNLTQLDSVDLSGNLLLSLPANFLRHSINLQKVHLSNNRFLQIPSSALSDVSIPRLSWLNLTG 1122

  Fly   860 NFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFMGLEN 924
            |.|:.|:::. ..::..|:.|.|....|..:....|.....|..|.|.:||..::...:|..|.|
  Fly  1123 NPINRIYTVK-EERYPYLKELYICQTNLSILTSKDFEAFQALQHLHLVNNRITRISPGAFKSLTN 1186

  Fly   925 SLIKLGLENISLSTVPEIRLKYLREFR---LGYNELPSIPQELAHNMSNLRMLDLSNNDLTNVPL 986
             |:.|.|....|..:|:.||:.||..|   :.:|.|..: :|.:.::..::.||||.|.|..:..
  Fly  1187 -LLTLDLSVNELEMLPKERLQGLRLLRFLNISHNTLKDL-EEFSVDLLEMQTLDLSFNQLDRISK 1249

  Fly   987 MT-QALPHLRRLMLSGNPITSLNNNSFDGVNEDLEMLDISNFRLHYFEYGCLDSL----PHLRSL 1046
            .| :.|..|..|.|.||.:|.|:|::|    ..|..|.:.:.|.:|||...|:.|    .:||:|
  Fly  1250 KTFRNLHGLLELFLMGNRMTVLSNDAF----RFLRKLHVLDLRKNYFELVPLEPLRPLETNLRTL 1310

  Fly  1047 KL---TAYSHLEHFNIPHLLRHHYNIRQLWIEAPQPFTRIVKKGSGPTQ------------EMQT 1096
            :|   ..:...:...:...||.|    :.|         .:..|||..:            .:..
  Fly  1311 RLEENPLHCSCDAQKLWEWLRDH----RKW---------SLSMGSGAGRGIGGLTGGLGGDSINY 1362

  Fly  1097 LQLGNPTDLQREMEGHL 1113
            |:..:||:|:.::.|.:
  Fly  1363 LRCEHPTELRGKVFGRM 1379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 LRR <84..320 CDD:443914 74/296 (25%)
leucine-rich repeat 84..103 CDD:275380 2/18 (11%)
leucine-rich repeat 104..128 CDD:275380 10/23 (43%)
leucine-rich repeat 129..152 CDD:275380 7/22 (32%)
leucine-rich repeat 153..177 CDD:275380 10/62 (16%)
leucine-rich repeat 178..201 CDD:275380 7/22 (32%)
leucine-rich repeat 202..226 CDD:275380 11/45 (24%)
leucine-rich repeat 227..250 CDD:275380 7/22 (32%)
leucine-rich repeat 251..279 CDD:275380 5/27 (19%)
leucine-rich repeat 280..326 CDD:275380 15/46 (33%)
leucine-rich repeat 327..348 CDD:275380 3/20 (15%)
leucine-rich repeat 352..375 CDD:275380 5/22 (23%)
PPP1R42 355..564 CDD:455733 46/217 (21%)
leucine-rich repeat 376..401 CDD:275380 4/24 (17%)
leucine-rich repeat 426..450 CDD:275378 0/23 (0%)
leucine-rich repeat 451..474 CDD:275380 6/22 (27%)
LRR_8 473..559 CDD:404697 28/94 (30%)
leucine-rich repeat 475..524 CDD:275380 14/57 (25%)
leucine-rich repeat 500..519 CDD:275380 2/18 (11%)
leucine-rich repeat 525..548 CDD:275380 8/22 (36%)
LRR <540..>834 CDD:443914 75/305 (25%)
leucine-rich repeat 549..574 CDD:275380 6/24 (25%)
leucine-rich repeat 575..598 CDD:275380 0/22 (0%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
leucine-rich repeat 623..646 CDD:275380 7/22 (32%)
leucine-rich repeat 647..730 CDD:275380 22/93 (24%)
leucine-rich repeat 648..673 CDD:275380 8/34 (24%)
leucine-rich repeat 674..705 CDD:275380 6/31 (19%)
LRR <730..1081 CDD:443914 100/362 (28%)
leucine-rich repeat 731..754 CDD:275380 5/22 (23%)
leucine-rich repeat 755..778 CDD:275380 8/22 (36%)
leucine-rich repeat 779..802 CDD:275380 2/22 (9%)
leucine-rich repeat 803..823 CDD:275380 10/20 (50%)
leucine-rich repeat 852..876 CDD:275380 6/23 (26%)
leucine-rich repeat 877..900 CDD:275380 5/22 (23%)
leucine-rich repeat 901..925 CDD:275380 7/23 (30%)
leucine-rich repeat 926..946 CDD:275380 7/19 (37%)
leucine-rich repeat 947..970 CDD:275380 6/25 (24%)
leucine-rich repeat 971..993 CDD:275380 8/22 (36%)
leucine-rich repeat 994..1014 CDD:275380 9/19 (47%)
leucine-rich repeat 1019..1042 CDD:275380 8/26 (31%)
CG42346NP_001036303.2 LRR <301..606 CDD:443914 73/308 (24%)
leucine-rich repeat 303..325 CDD:275380 2/18 (11%)
leucine-rich repeat 327..350 CDD:275380 8/25 (32%)
leucine-rich repeat 351..461 CDD:275380 21/109 (19%)
leucine-rich repeat 399..422 CDD:275380 7/22 (32%)
leucine-rich repeat 462..485 CDD:275380 8/23 (35%)
LRR 486..>736 CDD:443914 64/257 (25%)
leucine-rich repeat 486..509 CDD:275380 7/22 (32%)
leucine-rich repeat 510..533 CDD:275380 9/22 (41%)
leucine-rich repeat 534..556 CDD:275380 2/21 (10%)
leucine-rich repeat 557..580 CDD:275380 7/22 (32%)
leucine-rich repeat 581..604 CDD:275380 5/27 (19%)
leucine-rich repeat 605..628 CDD:275380 9/22 (41%)
PPP1R42 627..860 CDD:455733 59/271 (22%)
leucine-rich repeat 629..652 CDD:275380 6/22 (27%)
leucine-rich repeat 653..676 CDD:275380 4/23 (17%)
leucine-rich repeat 677..700 CDD:275380 5/22 (23%)
leucine-rich repeat 701..748 CDD:275380 8/48 (17%)
leucine-rich repeat 725..736 CDD:275378 3/10 (30%)
leucine-rich repeat 749..772 CDD:275380 6/47 (13%)
leucine-rich repeat 773..793 CDD:275380 10/19 (53%)
leucine-rich repeat 821..844 CDD:275380 8/22 (36%)
leucine-rich repeat 845..868 CDD:275380 6/48 (13%)
LRR 869..1226 CDD:443914 104/378 (28%)
leucine-rich repeat 869..892 CDD:275380 8/22 (36%)
leucine-rich repeat 893..915 CDD:275380 7/22 (32%)
leucine-rich repeat 916..944 CDD:275380 8/32 (25%)
leucine-rich repeat 945..968 CDD:275380 7/34 (21%)
leucine-rich repeat 969..992 CDD:275380 6/22 (27%)
leucine-rich repeat 993..1014 CDD:275380 4/20 (20%)
leucine-rich repeat 1017..1040 CDD:275380 8/22 (36%)
leucine-rich repeat 1041..1064 CDD:275380 2/22 (9%)
leucine-rich repeat 1089..1114 CDD:275380 10/24 (42%)
leucine-rich repeat 1115..1162 CDD:275380 11/47 (23%)
PPP1R42 1155..1317 CDD:455733 51/167 (31%)
leucine-rich repeat 1163..1186 CDD:275380 7/22 (32%)
leucine-rich repeat 1187..1210 CDD:275380 8/22 (36%)
leucine-rich repeat 1211..1233 CDD:275380 4/22 (18%)
leucine-rich repeat 1234..1257 CDD:275380 8/22 (36%)
leucine-rich repeat 1258..1279 CDD:275380 9/24 (38%)
leucine-rich repeat 1282..1306 CDD:275380 7/23 (30%)

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