DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and Tlr7

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:XP_017457568.1 Gene:Tlr7 / 317468 RGDID:1563357 Length:1068 Species:Rattus norvegicus


Alignment Length:1094 Identity:257/1094 - (23%)
Similarity:398/1094 - (36%) Gaps:308/1094 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 YP---PCTYNVMCTCSKSSTDLGIVHCKNVP--FPA-----------LPRMVNQSKVFMLHMENT 89
            ||   ||..::..|.:....|....|...:|  .|.           :|.:...|...:.|:|..
  Rat    48 YPKTLPCDVSLDSTNTHVIVDCTDKHLTEIPEGIPTNTTNLTLTINHIPSISPDSFHRLKHLEEL 112

  Fly    90 GLR-EIEPYFLQS----------------TGMYRLK---ISGNHLTEIPDDAFTGLERSLWELIL 134
            .|| ...|..|.|                :|:..||   :.||.|.|||.|    |..||..|.|
  Rat   113 DLRCNCVPILLGSKANVCTKRLQIRPGSFSGLSDLKSLYLDGNQLLEIPQD----LPSSLQLLSL 173

  Fly   135 PQNDLVEIPSKSLRHLQKLRHLDLGYN-------HITH-IQHDSF--------RGLED------- 176
            ..|::..|..::|..|..:..|.||.|       :::: |:.|:|        ..|:|       
  Rat   174 EANNIFSITKENLSELVNIESLYLGQNCYYRNPCNVSYSIEKDAFLVMKNLKVLSLKDNNVTAVP 238

  Fly   177 -----SLQTLILRENCISQLMSHSFSGLLILETLDLSG-----------------NNLFEIDPNV 219
                 :|..|.|..|.|.::..|.|:.|..|:.|||||                 |:..:|..|.
  Rat   239 TILPPNLLELYLYNNIIKRIQEHDFNKLSQLQVLDLSGNCPRCYNVPYPCTPCENNSPLQIHDNA 303

  Fly   220 FVDGMPRLTRLLLTDNILSEIPYDALGPLKSLRTLDISHNVIWSLSGNETYEIKASTKL-NLDNL 283
            | |.:..|..|.|..|.|..:|.:....:.:|:.||:|.|.:    ..|..|.|....| ||..|
  Rat   304 F-DSLTELKVLRLHSNSLQHVPAEWFKNMSNLQELDLSQNYL----AREIEEAKFLNSLPNLVQL 363

  Fly   284 HLEYN------HIEVLPPNSFKYFDTVNRTFFDGNPIHTLREDAFKPARIREIYMRYCGLTNISP 342
            .|.:|      |..:..|:|......:...:..|.....|::.:...            |.|:| 
  Rat   364 DLSFNYELQVYHASITLPHSLSSLTKLKNLYIKGYVFKELKDSSLSV------------LHNLS- 415

  Fly   343 VAFDSLVNSLQILDLSGNNLTKLHH-KLFNNFDVLRVISMRDNKIKIQKPTETFNAVHYTLLKLD 406
                    :|::||| |.|..|:.. .:|..|:.|:.|.:..|||   .|:|....|. ......
  Rat   416 --------NLEVLDL-GTNFIKIADLNIFQQFENLKFIDLSVNKI---SPSEESREVG-LCPNAQ 467

  Fly   407 LSGDRNDPTNLQTLRKMRNMRSLSISRLGSSSVGPEDFKDFGVEL----EDLQITRASLSGIQSH 467
            .|.|.:.|..|:.|...|........|..:..  |..|.....:.    :.|.::|.::..|:..
  Rat   468 TSVDWHGPQVLEALHYFRYDEYARSCRFKNKE--PPTFLPLNADCHTYGKTLDLSRNNIFFIKPS 530

  Fly   468 AFKHVRGLKRLDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELDFSN 532
            .|||:..||.|:.|.|.           ||.:|         :||.|  :|||   .|:.|||||
  Rat   531 DFKHLSFLKCLNLSGNA-----------IGQTL---------NGSEL--QPLR---ELRYLDFSN 570

  Fly   533 NHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLE 597
            |.:..:..|:|..|:||.:|:|..|      ...||.:          ...|:.:.::    .|.
  Rat   571 NRLDLLYSTAFEELQNLEILDLSSN------SHYFQAE----------GITHMLNFTK----KLR 615

  Fly   598 ALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPNFNF 662
            .|.||.::||.|.....|. |..:.|..|..|||.                 ||:.:....|...
  Rat   616 HLEKLMMNDNDISTSASRT-MESESLRVLEFRGNH-----------------LDVLWRDGDNRYL 662

  Fly   663 DYFDQVGTLSNLNVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRPA 727
            |:|      .||                             .|::.||:|.|:::.:.||.|...
  Rat   663 DFF------KNL-----------------------------LNLEELDISRNSLNSVPPGVFEGM 692

  Fly   728 EISLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDI 792
            ..:||.|.|..|.|.:.:......:.||:.||||:|.:..:.......:|.|..:...||.:..:
  Rat   693 PPNLTTLSLAKNGLRSFSWGRLQLLKHLKNLDLSHNQLTTVPARLANCSKSLTKLILNHNQIRQL 757

  Fly   793 PQDIFKPVQGLRIVDFSHNHLR-----GLPDNLFYNGGMEKLDVSHNMML--------------- 837
            .:...:....||.:|.|.|.::     ..|:|:..|  :..|.:.||..|               
  Rat   758 TKYFLEDALQLRYLDISSNKIQVIQKTSFPENVLNN--LNMLLLHHNRFLCNCDAVWFVWWVNHT 820

  Fly   838 --KIP---------------SSSLSSLAALTLCELHLSNNF-----ISTIHSMDLSNKFRSLRYL 880
              .||               ..|:.||...| |||.|:|..     ||::..:.:......|.:.
  Rat   821 DVTIPYLATDVTCAGPGAHKGQSVISLDLYT-CELDLTNLILFSVSISSVLFLMIVMTTSHLFFW 884

  Fly   881 DISYNYLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFMGLENSLIKLGLENISLSTVPE---- 941
            |:.|.|...          |..:....|   |:.|:..:    ::.|....:|   |.|.|    
  Rat   885 DMWYIYYFW----------KAKIKGYQH---LQSMESCY----DAFIVYDTKN---SAVTEWVLQ 929

  Fly   942 ---IRLKYLRE--FRLGYNELPSIP-QELAHNMSNLRMLDLSNNDLTNVPLMTQ 989
               ::|:..||  |.|...|...:| |.:..|:|  :.:.||..   .|.:|||
  Rat   930 ELVVKLEDPREKHFNLCLEERDWLPGQPVLENLS--QSIQLSRK---TVFVMTQ 978

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380 7/35 (20%)
LRR_8 102..163 CDD:290566 23/70 (33%)
leucine-rich repeat 104..128 CDD:275380 10/26 (38%)
LRR_RI <128..261 CDD:238064 47/177 (27%)
leucine-rich repeat 129..152 CDD:275380 7/22 (32%)
LRR_8 152..212 CDD:290566 24/104 (23%)
leucine-rich repeat 153..177 CDD:275380 9/51 (18%)
leucine-rich repeat 178..201 CDD:275380 8/22 (36%)
LRR_8 202..261 CDD:290566 22/75 (29%)
leucine-rich repeat 202..226 CDD:275380 11/40 (28%)
leucine-rich repeat 227..250 CDD:275380 6/22 (27%)
leucine-rich repeat 251..279 CDD:275380 9/28 (32%)
leucine-rich repeat 280..326 CDD:275380 9/51 (18%)
LRR_8 326..386 CDD:290566 15/60 (25%)
leucine-rich repeat 327..348 CDD:275380 3/20 (15%)
leucine-rich repeat 352..375 CDD:275380 9/23 (39%)
leucine-rich repeat 376..401 CDD:275380 8/24 (33%)
leucine-rich repeat 426..450 CDD:275378 3/23 (13%)
LRR_RI <448..651 CDD:238064 52/206 (25%)
leucine-rich repeat 451..474 CDD:275380 6/26 (23%)
LRR_8 473..559 CDD:290566 29/85 (34%)
leucine-rich repeat 475..524 CDD:275380 14/48 (29%)
leucine-rich repeat 500..519 CDD:275380 4/18 (22%)
leucine-rich repeat 525..548 CDD:275380 10/22 (45%)
leucine-rich repeat 549..574 CDD:275380 6/24 (25%)
LRR_8 573..633 CDD:290566 15/59 (25%)
leucine-rich repeat 575..598 CDD:275380 2/22 (9%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
LRR_8 622..683 CDD:290566 12/60 (20%)
leucine-rich repeat 623..646 CDD:275380 5/22 (23%)
leucine-rich repeat 647..730 CDD:275380 15/82 (18%)
leucine-rich repeat 648..673 CDD:275380 5/24 (21%)
leucine-rich repeat 674..705 CDD:275380 1/30 (3%)
LRR_8 704..763 CDD:290566 20/58 (34%)
leucine-rich repeat 731..754 CDD:275380 6/22 (27%)
LRR_8 753..813 CDD:290566 16/59 (27%)
leucine-rich repeat 755..778 CDD:275380 6/22 (27%)
leucine-rich repeat 779..802 CDD:275380 3/22 (14%)
leucine-rich repeat 803..823 CDD:275380 7/24 (29%)
leucine-rich repeat 852..876 CDD:275380 7/28 (25%)
LRR_8 854..910 CDD:290566 12/60 (20%)
LRR_RI <877..>1006 CDD:238064 29/123 (24%)
leucine-rich repeat 877..900 CDD:275380 4/22 (18%)
leucine-rich repeat 901..925 CDD:275380 3/23 (13%)
leucine-rich repeat 926..946 CDD:275380 6/26 (23%)
LRR_8 947..1004 CDD:290566 15/46 (33%)
leucine-rich repeat 947..970 CDD:275380 8/25 (32%)
leucine-rich repeat 971..993 CDD:275380 6/19 (32%)
LRR_8 992..1049 CDD:290566
leucine-rich repeat 994..1014 CDD:275380
leucine-rich repeat 1019..1042 CDD:275380
Tlr7XP_017457568.1 leucine-rich repeat 66..87 CDD:275380 4/20 (20%)
LRR_8 93..157 CDD:290566 14/63 (22%)
leucine-rich repeat 109..146 CDD:275380 7/36 (19%)
leucine-rich repeat 147..191 CDD:275380 18/47 (38%)
leucine-rich repeat 192..223 CDD:275380 7/30 (23%)
LRR_8 222..277 CDD:290566 15/54 (28%)
LRR_RI 223..472 CDD:238064 67/279 (24%)
leucine-rich repeat 224..244 CDD:275380 2/19 (11%)
leucine-rich repeat 245..268 CDD:275380 8/22 (36%)
leucine-rich repeat 269..309 CDD:275380 11/40 (28%)
LRR_8 308..368 CDD:290566 19/63 (30%)
leucine-rich repeat 310..333 CDD:275380 6/22 (27%)
leucine-rich repeat 334..359 CDD:275380 9/28 (32%)
leucine-rich repeat 370..389 CDD:275380 3/18 (17%)
leucine-rich repeat 390..416 CDD:275380 5/46 (11%)
leucine-rich repeat 417..440 CDD:275380 9/23 (39%)
LRR_8 515..573 CDD:290566 27/82 (33%)
leucine-rich repeat 515..537 CDD:275380 6/21 (29%)
LRR_RI 532..778 CDD:238064 86/343 (25%)
leucine-rich repeat 538..562 CDD:275380 14/48 (29%)
LRR_8 561..627 CDD:290566 25/88 (28%)
leucine-rich repeat 563..586 CDD:275380 10/22 (45%)
leucine-rich repeat 587..616 CDD:275380 8/48 (17%)
leucine-rich repeat 617..639 CDD:275380 8/22 (36%)
LRR_8 639..706 CDD:290566 25/118 (21%)
leucine-rich repeat 640..670 CDD:275380 12/81 (15%)
leucine-rich repeat 671..695 CDD:275380 7/23 (30%)
LRR_8 694..754 CDD:290566 17/59 (29%)
leucine-rich repeat 696..719 CDD:275380 6/22 (27%)
leucine-rich repeat 720..743 CDD:275380 6/22 (27%)
leucine-rich repeat 768..786 CDD:275380 5/17 (29%)
TIR 909..1054 CDD:214587 21/82 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 155 1.000 Inparanoid score I4210
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.050

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