Protein Alignment chp and Lrrc4b

DIOPT Version :10

• Sequence 1: NP_001263137.1
• Gene: chp / 43690
• FlyBaseID: FBgn0267435
• Length: 1338
• Species: Drosophila melanogaster
• Sequence 2: NP_001258010.1
• Gene: Lrrc4b / 308571
• RGDID: 1307121
• Length: 709
• Species: Rattus norvegicus
• Alignment Length: 367
• Identity: 90/367 - (24%)
• Similarity: 154/367 - (41%)
• Gaps: 86/367 - (23%)

  Fly   454 LQITRASLSGIQSHAFKHVRGLKRLDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSALPAEP 518
            |.:...|:..|::..|||:|.|:.|..|:|.:..||..||:.: .||.:|::..... :.:|.:.
  Rat    93 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGL-PSLNTLELFDNRL-TTVPTQA 155

  Fly   519 LRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHD-NRIEQVLKGTFQG------------- 569
            ..:|:.|:||...||.|.|:...:|:.:.:||.|:|.: .|:|.:.:..|:|
  Rat   156 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN 220

  Fly   570 --DIHS-----KLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLS 627
              ||.:     :|||:.|..|.|..|...:|..|.:||||.|...::..|||.||.:|..||.|:
  Rat   221 LKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 285

  Fly   628 LRGNKINNLADESFQNLPKLEILDMAFN------------------------------------- 655
            |..|.:.:|..:.|..|.:||.:.:..|
  Rat   286 LSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKG 350

  Fly   656 ----QLPNFNFDYFDQVGTLSNLNVNVSHNQIRQL-------MYNSSWSGRNEHGG--MYHSNIK 707
                :|...:|..:..|......::||:.....:|       |.:.:|...|   |  |.|.:.:
  Rat   351 RYIGELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCRTGTSMTSVNWLTPN---GTLMTHGSYR 412

  Fly   708 ILDLSHNNISIIHPGYFRPAEISL----THLHLGYNSLMNTT 745
            :      .||::|.|......:::    .:..:..||..|||
  Rat   413 V------RISVLHDGTLNFTNVTVQDTGQYTCMVTNSAGNTT 448

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
chp	NP_001263137.1	LRR	<84..320	CDD:443914
		leucine-rich repeat	84..103	CDD:275380
		leucine-rich repeat	104..128	CDD:275380
		leucine-rich repeat	129..152	CDD:275380
		leucine-rich repeat	153..177	CDD:275380
		leucine-rich repeat	178..201	CDD:275380
		leucine-rich repeat	202..226	CDD:275380
		leucine-rich repeat	227..250	CDD:275380
		leucine-rich repeat	251..279	CDD:275380
		leucine-rich repeat	280..326	CDD:275380
		leucine-rich repeat	327..348	CDD:275380
		leucine-rich repeat	352..375	CDD:275380
		PPP1R42	355..564	CDD:455733	34/110 (31%)
		leucine-rich repeat	376..401	CDD:275380
		leucine-rich repeat	426..450	CDD:275378
		leucine-rich repeat	451..474	CDD:275380	6/19 (32%)
		LRR_8	473..559	CDD:404697	26/86 (30%)
		leucine-rich repeat	475..524	CDD:275380	13/48 (27%)
		leucine-rich repeat	500..519	CDD:275380	3/18 (17%)
		leucine-rich repeat	525..548	CDD:275380	8/22 (36%)
		LRR	<540..>834	CDD:443914	63/281 (22%)
		leucine-rich repeat	549..574	CDD:275380	10/45 (22%)
		leucine-rich repeat	575..598	CDD:275380	9/22 (41%)
		leucine-rich repeat	599..622	CDD:275380	11/22 (50%)
		leucine-rich repeat	623..646	CDD:275380	8/22 (36%)
		leucine-rich repeat	647..730	CDD:275380	19/132 (14%)
		leucine-rich repeat	648..673	CDD:275380	5/65 (8%)
		leucine-rich repeat	674..705	CDD:275380	9/39 (23%)
		LRR	<730..1081	CDD:443914	5/20 (25%)
		leucine-rich repeat	731..754	CDD:275380	5/19 (26%)
		leucine-rich repeat	755..778	CDD:275380
		leucine-rich repeat	779..802	CDD:275380
		leucine-rich repeat	803..823	CDD:275380
		leucine-rich repeat	852..876	CDD:275380
		leucine-rich repeat	877..900	CDD:275380
		leucine-rich repeat	901..925	CDD:275380
		leucine-rich repeat	926..946	CDD:275380
		leucine-rich repeat	947..970	CDD:275380
		leucine-rich repeat	971..993	CDD:275380
		leucine-rich repeat	994..1014	CDD:275380
		leucine-rich repeat	1019..1042	CDD:275380
Lrrc4b	NP_001258010.1	LRRNT	59..92	CDD:214470
		LRR	<89..>314	CDD:443914	68/222 (31%)
		LRR 1	89..110		4/16 (25%)
		leucine-rich repeat	90..113	CDD:275380	6/19 (32%)
		LRR 2	113..134		8/20 (40%)
		leucine-rich repeat	114..137	CDD:275380	8/23 (35%)
		LRR 3	137..158		4/21 (19%)
		leucine-rich repeat	138..161	CDD:275380	4/23 (17%)
		LRR 4	161..182		8/20 (40%)
		leucine-rich repeat	162..185	CDD:275380	8/22 (36%)
		LRR 5	185..207		7/21 (33%)
		leucine-rich repeat	186..210	CDD:275380	8/23 (35%)
		LRR 6	210..231		2/20 (10%)
		leucine-rich repeat	211..232	CDD:275380	2/20 (10%)
		LRR 7	232..253		8/20 (40%)
		leucine-rich repeat	233..256	CDD:275380	9/22 (41%)
		LRR 8	256..277		10/20 (50%)
		leucine-rich repeat	257..280	CDD:275380	11/22 (50%)
		LRR 9	280..301		7/20 (35%)
		leucine-rich repeat	281..302	CDD:275380	7/20 (35%)
		LRRCT	313..363	CDD:214507	3/49 (6%)
		I-set	366..455	CDD:400151	19/92 (21%)
		Ig strand B	383..387	CDD:409353	1/3 (33%)
		Ig strand C	395..399	CDD:409353	0/3 (0%)
		Ig strand E	421..425	CDD:409353	1/3 (33%)
		Ig strand F	435..440	CDD:409353	0/4 (0%)
		Ig strand G	448..451	CDD:409353	1/1 (100%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	496..552