DRSC/TRiP Functional Genomics Resources

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Protein Alignment chp and Lrrc3

DIOPT Version :9

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_663712.1 Gene:Lrrc3 / 246773 RGDID:628861 Length:257 Species:Rattus norvegicus


Alignment Length:274 Identity:72/274 - (26%)
Similarity:103/274 - (37%) Gaps:59/274 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   436 SSSVGPEDFKDFGVELEDLQITRASLSGIQSHAFKHVRGLKRLDFSENGISSIENDAFHEIGHSL 500
            ||.:.|.....|.:    |...|...|..||.......|...:..|..|:..|..|    |..:.
  Rat    10 SSPLAPSQGSCFFI----LFCLRLGASCPQSCQCPDHAGAVAVHCSSRGLQEIPRD----IPANT 66

  Fly   501 ISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTSFHFLK-NLRLLELHDNRIEQVLK 564
            :.||:..... |.:|....:||..|:|||.|:|.|.::...:|..|. .||||:|..|||.::.|
  Rat    67 VLLKLDANRI-SRVPNGAFQHLPQLRELDLSHNAIEAIGPAAFSGLAGGLRLLDLSHNRIRRIPK 130

  Fly   565 GTFQGDIHSKLE-EISLRFN--HLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYL 626
                 |...||. :|.|..|  |.....|      |||.:|.||.:.:|:|              
  Rat   131 -----DALGKLSAKIRLSHNPLHCECALQ------EALWELKLDPDSVDEI-------------- 170

  Fly   627 SLRGNKINNLADESFQNLPKLEILDMAFNQLPNFN-----------FDYFDQVGTLSNLNVNVSH 680
                 ..:..|.|.|...|.:::||...:......           |.:|..|  ::.:...|.|
  Rat   171 -----ACHTSAQEQFVGKPLIQVLDSGASFCSTHRKTTDVAMLVTMFGWFTMV--IAYVVYYVRH 228

  Fly   681 NQ---IRQLMYNSS 691
            ||   .|.|.|..|
  Rat   229 NQEDARRHLEYLKS 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380
LRR_8 102..163 CDD:290566
leucine-rich repeat 104..128 CDD:275380
LRR_RI <128..261 CDD:238064
leucine-rich repeat 129..152 CDD:275380
LRR_8 152..212 CDD:290566
leucine-rich repeat 153..177 CDD:275380
leucine-rich repeat 178..201 CDD:275380
LRR_8 202..261 CDD:290566
leucine-rich repeat 202..226 CDD:275380
leucine-rich repeat 227..250 CDD:275380
leucine-rich repeat 251..279 CDD:275380
leucine-rich repeat 280..326 CDD:275380
LRR_8 326..386 CDD:290566
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 352..375 CDD:275380
leucine-rich repeat 376..401 CDD:275380
leucine-rich repeat 426..450 CDD:275378 4/13 (31%)
LRR_RI <448..651 CDD:238064 55/206 (27%)
leucine-rich repeat 451..474 CDD:275380 5/22 (23%)
LRR_8 473..559 CDD:290566 27/86 (31%)
leucine-rich repeat 475..524 CDD:275380 11/48 (23%)
leucine-rich repeat 500..519 CDD:275380 4/18 (22%)
leucine-rich repeat 525..548 CDD:275380 9/23 (39%)
leucine-rich repeat 549..574 CDD:275380 10/24 (42%)
LRR_8 573..633 CDD:290566 15/62 (24%)
leucine-rich repeat 575..598 CDD:275380 6/25 (24%)
leucine-rich repeat 599..622 CDD:275380 6/22 (27%)
LRR_8 622..683 CDD:290566 13/74 (18%)
leucine-rich repeat 623..646 CDD:275380 3/22 (14%)
leucine-rich repeat 647..730 CDD:275380 13/59 (22%)
leucine-rich repeat 648..673 CDD:275380 5/35 (14%)
leucine-rich repeat 674..705 CDD:275380 8/21 (38%)
LRR_8 704..763 CDD:290566
leucine-rich repeat 731..754 CDD:275380
LRR_8 753..813 CDD:290566
leucine-rich repeat 755..778 CDD:275380
leucine-rich repeat 779..802 CDD:275380
leucine-rich repeat 803..823 CDD:275380
leucine-rich repeat 852..876 CDD:275380
LRR_8 854..910 CDD:290566
LRR_RI <877..>1006 CDD:238064
leucine-rich repeat 877..900 CDD:275380
leucine-rich repeat 901..925 CDD:275380
leucine-rich repeat 926..946 CDD:275380
LRR_8 947..1004 CDD:290566
leucine-rich repeat 947..970 CDD:275380
leucine-rich repeat 971..993 CDD:275380
LRR_8 992..1049 CDD:290566
leucine-rich repeat 994..1014 CDD:275380
leucine-rich repeat 1019..1042 CDD:275380
Lrrc3NP_663712.1 LRRNT 33..68 CDD:214470 8/38 (21%)
leucine-rich repeat 48..65 CDD:275378 5/20 (25%)
LRR 1 65..86 4/21 (19%)
leucine-rich repeat 66..89 CDD:275378 6/23 (26%)
LRR_8 69..125 CDD:404697 21/56 (38%)
LRR 2 89..110 8/20 (40%)
leucine-rich repeat 90..114 CDD:275378 9/23 (39%)
LRR 3 114..135 10/25 (40%)
leucine-rich repeat 115..138 CDD:275378 12/27 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24369
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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