DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and lron-15

DIOPT Version :10

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_495322.3 Gene:lron-15 / 174079 WormBaseID:WBGene00016974 Length:1275 Species:Caenorhabditis elegans


Alignment Length:1357 Identity:330/1357 - (24%)
Similarity:578/1357 - (42%) Gaps:198/1357 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 NVMCTCSKS----STD----LGIVH-------CKNVPFPALPRMVNQ-----------SKVFMLH 85
            |:..:|.||    :.|    ||.||       |.:||....|.:.:|           |...:|.
 Worm    19 NLQVSCLKSHKRTTNDRCSFLGDVHDIWSHCQCISVPSVTAPGIFSQESPIHIMCHHTSSATVLQ 83

  Fly    86 MENTGLREIEPYFLQSTGM------------------YRLKISGNHLTEIPDDAFTGLERSLWEL 132
            :.|:...:..|..:.:..|                  ..|..|.|.:..:..:||.|||..|.:|
 Worm    84 LPNSETMKGPPPHIVALSMTDGSMAFVQQDAFKHHDIQTLDFSNNQIQTVNVNAFRGLEMKLTQL 148

  Fly   133 ILPQNDLVEIPSKSLRHLQKLRHLDLGYNHITHIQHDSFRGLE-DSLQTLILRENCISQLMSHSF 196
            .|..|:|..||:.:|.:|..|:.|.|..|.|..::.::|...: ::||.|.|..|.:..:.:.:|
 Worm   149 DLSHNNLSVIPTWALTYLHSLQILHLENNRIDVLRSNTFDETQLNNLQFLYLDNNQLRIIPNLAF 213

  Fly   197 SGLLILETLDLSGNNLFEIDPNVFVDGMPR-LTRLLLTDNILSEIPYDALGPLKSLRTLDISHNV 260
            :.|.:: .|.|:.|.:.||...    .:|: |..|:|.:|:|::|||.||..||:|:::|:..|.
 Worm   214 NHLRLV-VLMLANNRITEIQKM----SLPQTLKFLVLRNNLLTQIPYVALNDLKTLQSIDLEGNN 273

  Fly   261 IWSLSGNETYEIKASTKLNLDNLHLEYNHIEVLPPNSFKYFDTVNRTFFDGNPIHTLREDAFKPA 325
            |..|........::..|:.|.|     |.:..|..:||:.|                       .
 Worm   274 ITHLMDTNEVTFESEMKVILRN-----NKVRRLDKHSFRSF-----------------------R 310

  Fly   326 RIREIYMRYCGLTNISPVAFDSLVNSLQILDLSGNNLTKLHHKLFNNF-DVLRVISMRDNKIKI- 388
            :|||:.:.|..:..:...:|:: |..:|.||||.|.:..|...:..|| ..|:.:.:.:|.|.. 
 Worm   311 KIRELDISYNQIQTVEDSSFET-VGHMQSLDLSYNRIAYLPRGMLKNFAKTLKTLKLAENMIHAT 374

  Fly   389 -QKPTETFNAVHY--------------------TLLKLDLSGDRNDPTNLQTLRKMRNMRSLSIS 432
             :...:..|..|.                    ||::|.::.:..:......|..|:.:..|.||
 Worm   375 PEALRDLRNLTHLNLNGNKLNRIDGDVLKGCTDTLVELFIANNYLEHIPHGVLSGMKQLEHLDIS 439

  Fly   433 RLGSSSV-GPEDFKDFGVELEDLQITRASLSGIQSH------AFKHVRGLKRLDFSENGISSIEN 490
            :....|: .|........| |...:.|.:|:|.:.:      .|:|:..|..:|.|.|.|..|..
 Worm   440 KNKIMSLKKPTSLLSITKE-ETSTVRRLNLAGNRINNMSDYLIFEHMPLLTYVDVSFNRIRFISP 503

  Fly   491 DAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELD------FSNNHISSMSDTSFHFLKNL 549
            ..|.:: .:|.||.:.:         ..|.|..||..||      ..||.|..:.:.|...|..|
 Worm   504 RVFEKL-KNLESLFLQN---------NQLAHFPSLFRLDKLRHLMLDNNQIQKIDNFSLADLPKL 558

  Fly   550 RLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIER 614
            :.|.|..|:::.:.:..|.....|:|:.::|..|.:.|||..:|.||:.|::|.|..|.|..|..
 Worm   559 QHLSLAGNQLDIITENMFGSSSSSELKSLNLAHNKIHSISSRSFSDLDNLQQLRLSHNNIRTITS 623

  Fly   615 RAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDYFDQVGTLSNLNVNVS 679
            ..|.||..|.||.|..|:|..:...:...||.|::|.:..|.|...:.|.|.....|.:|  .:|
 Worm   624 MTFSNLRNLRYLDLSHNRIIKILPSALYQLPALDVLHLDHNNLNEIDRDAFRSFSDLQSL--KLS 686

  Fly   680 HNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNT 744
            ||..|:  ::..:.|.       .|.:..||||.|.|:.|  ..|..|. .:..|.|..||:...
 Worm   687 HNAFRR--FSCEFLGS-------ISQVHQLDLSSNQINEI--DIFCIAR-GIRKLSLASNSVEKI 739

  Fly   745 TRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFS 809
            .|.:..:...|..:|:|:|.|.::|.|||...::|..:...|||:.::.:..|:..:.|..:|.|
 Worm   740 NRKLLQDATELTSIDISHNGIIDVDSDAFCECRKLSHIKLSHNYIRNLWKGTFQYQESLHTLDIS 804

  Fly   810 HNHLRGLPDNLFYNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELH---LSNNFISTIHSMDLS 871
            .|.:..|....|....:.:|.|::|.:.:||..:|||    |:..||   |::|.|..:.|..|:
 Worm   805 FNDILFLHQGTFGKNNILQLHVNNNKLSRIPLEALSS----TMASLHLLDLAHNNIKIVDSSQLT 865

  Fly   872 NKFRSLRYLDISYNYLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFMGLENSLIKLGLENISL 936
            : |.:|..|..:.|.:..|:|..|..:..|.:||||:|........:|..|.:|:..:.:.|..|
 Worm   866 S-FGNLSILSFANNKVDSIEDGAFENLLSLKILDLSNNPVTSWSPTAFRDLSHSISSINMANTGL 929

  Fly   937 STVPEIRLKYLREFRLGYNELPSIPQELAHNMSNLRMLDLSNNDLTNVPLMT-QALPHLRRLMLS 1000
            .::|:...:.::...:..|::..:.::....::.:..||:|:|:|..:..|. :.|.||::|.:|
 Worm   930 FSMPKFSHRSIQSLNISCNKIYELSEKDLAPLTKVVALDISHNNLKQISSMAFEPLIHLKQLNVS 994

  Fly  1001 GNPITSLNNNSFDGVNEDLEMLDISNFRLHYFEYGCLDSLPHLRSL----KLTAYSHLEHF---N 1058
            .||||.|.|.....:.: ||.|.:|:             :|.|..|    .....::|:||   |
 Worm   995 ANPITHLTNEHIQQLYK-LETLHVSD-------------MPFLLRLPDSHAFGQMNNLKHFFLYN 1045

  Fly  1059 IPHLLRHHYNIRQLWIEAPQPFTRIVK-KGSGPTQEMQTLQLGNPTDLQREMEGHLPSKLTNITF 1122
            ||.:.| .|.|..:....|...|..|. |.|...::..|..    |.|           |.::..
 Worm  1046 IPDMAR-PYQISSILSNLPPLHTIYVDIKESALDRQFYTAD----TRL-----------LRHLVV 1094

  Fly  1123 SGPQFTNLNERILRGMRSPYLYMQLFNTSLQALPPNFFKYMGRVRNISLDIRYHNRNLKKIPNPN 1187
            :|...|.:.......:|...:.:::.|:|::..|...|..:..:..:||.:. .|:.....|..:
 Worm  1095 AGRNLTKIEVGAFATIRGFRVRIEIHNSSIEEFPSRIFDTLTGISILSLSLT-DNKLTTFNPFQS 1158

  Fly  1188 TGAVPYLPNSVFLTDLKMSHTDLNCDCDLGWVEFWQRKRRQYICSSQTWTD-TVFRTFMNSPCQV 1251
            |.|.....:...|..|::.:..:.|||...|::       .:|..::..:| .:...|....|..
 Worm  1159 TVAPAVNQHGTILHSLELKNNPIKCDCQFKWMD-------DFIRVTKFLSDHHISHDFDKVECAD 1216

  Fly  1252 YGRHNCDEHDDDLRETRCENKGGQQLMEALKFDLECGWDNAN-CREAAFVVVMVCVA 1307
            ....|.:.......|..........|.::..|.|||....:| .:...:|:::||::
 Worm  1217 AQSSNLESFASAANELFSYKTKMTLLSKSEDFGLECAVKYSNPLKPLIYVLMLVCLS 1273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 LRR <84..320 CDD:443914 65/255 (25%)
leucine-rich repeat 84..103 CDD:275380 3/18 (17%)
leucine-rich repeat 104..128 CDD:275380 9/41 (22%)
leucine-rich repeat 129..152 CDD:275380 9/22 (41%)
leucine-rich repeat 153..177 CDD:275380 6/24 (25%)
leucine-rich repeat 178..201 CDD:275380 7/22 (32%)
leucine-rich repeat 202..226 CDD:275380 5/23 (22%)
leucine-rich repeat 227..250 CDD:275380 11/22 (50%)
leucine-rich repeat 251..279 CDD:275380 6/27 (22%)
leucine-rich repeat 280..326 CDD:275380 7/45 (16%)
leucine-rich repeat 327..348 CDD:275380 5/20 (25%)
leucine-rich repeat 352..375 CDD:275380 9/23 (39%)
PPP1R42 355..564 CDD:455733 55/244 (23%)
leucine-rich repeat 376..401 CDD:275380 5/46 (11%)
leucine-rich repeat 426..450 CDD:275378 5/24 (21%)
leucine-rich repeat 451..474 CDD:275380 6/28 (21%)
LRR_8 473..559 CDD:404697 25/91 (27%)
leucine-rich repeat 475..524 CDD:275380 12/48 (25%)
leucine-rich repeat 500..519 CDD:275380 3/18 (17%)
leucine-rich repeat 525..548 CDD:275380 8/28 (29%)
LRR <540..>834 CDD:443914 84/293 (29%)
leucine-rich repeat 549..574 CDD:275380 5/24 (21%)
leucine-rich repeat 575..598 CDD:275380 9/22 (41%)
leucine-rich repeat 599..622 CDD:275380 9/22 (41%)
leucine-rich repeat 623..646 CDD:275380 7/22 (32%)
leucine-rich repeat 647..730 CDD:275380 23/82 (28%)
leucine-rich repeat 648..673 CDD:275380 6/24 (25%)
leucine-rich repeat 674..705 CDD:275380 6/30 (20%)
LRR <730..1081 CDD:443914 95/361 (26%)
leucine-rich repeat 731..754 CDD:275380 5/22 (23%)
leucine-rich repeat 755..778 CDD:275380 9/22 (41%)
leucine-rich repeat 779..802 CDD:275380 5/22 (23%)
leucine-rich repeat 803..823 CDD:275380 6/19 (32%)
leucine-rich repeat 852..876 CDD:275380 8/26 (31%)
leucine-rich repeat 877..900 CDD:275380 6/22 (27%)
leucine-rich repeat 901..925 CDD:275380 8/23 (35%)
leucine-rich repeat 926..946 CDD:275380 3/19 (16%)
leucine-rich repeat 947..970 CDD:275380 1/22 (5%)
leucine-rich repeat 971..993 CDD:275380 7/22 (32%)
leucine-rich repeat 994..1014 CDD:275380 9/19 (47%)
leucine-rich repeat 1019..1042 CDD:275380 4/22 (18%)
lron-15NP_495322.3 PLN00113 120..>648 CDD:215061 149/572 (26%)
leucine-rich repeat 120..144 CDD:275380 8/23 (35%)
leucine-rich repeat 145..168 CDD:275380 9/22 (41%)
leucine-rich repeat 169..194 CDD:275380 6/24 (25%)
leucine-rich repeat 195..217 CDD:275380 6/21 (29%)
leucine-rich repeat 218..239 CDD:275380 6/25 (24%)
leucine-rich repeat 240..263 CDD:275380 11/22 (50%)
leucine-rich repeat 264..311 CDD:275380 13/74 (18%)
leucine-rich repeat 312..335 CDD:275380 6/23 (26%)
leucine-rich repeat 336..356 CDD:275380 7/19 (37%)
leucine-rich repeat 361..383 CDD:275380 3/21 (14%)
leucine-rich repeat 384..405 CDD:275380 1/20 (5%)
leucine-rich repeat 409..432 CDD:275380 4/22 (18%)
LRR 415..840 CDD:443914 120/449 (27%)
leucine-rich repeat 433..462 CDD:275380 7/29 (24%)
leucine-rich repeat 463..487 CDD:275380 5/23 (22%)
leucine-rich repeat 488..511 CDD:275380 7/23 (30%)
leucine-rich repeat 512..533 CDD:275380 8/29 (28%)
leucine-rich repeat 534..557 CDD:275380 5/22 (23%)
leucine-rich repeat 558..581 CDD:275380 5/22 (23%)
leucine-rich repeat 584..607 CDD:275380 9/22 (41%)
leucine-rich repeat 608..631 CDD:275380 9/22 (41%)
leucine-rich repeat 632..655 CDD:275380 7/22 (32%)
leucine-rich repeat 656..676 CDD:275380 6/19 (32%)
leucine-rich repeat 680..703 CDD:275380 7/33 (21%)
leucine-rich repeat 704..749 CDD:275380 14/47 (30%)
leucine-rich repeat 726..739 CDD:275378 4/12 (33%)
leucine-rich repeat 750..771 CDD:275380 9/20 (45%)
leucine-rich repeat 774..797 CDD:275380 5/22 (23%)
LRR <791..1089 CDD:443914 84/332 (25%)
leucine-rich repeat 798..845 CDD:275380 15/50 (30%)
leucine-rich repeat 846..869 CDD:275380 8/23 (35%)
leucine-rich repeat 870..893 CDD:275380 6/22 (27%)
leucine-rich repeat 894..915 CDD:275380 7/20 (35%)
leucine-rich repeat 940..963 CDD:275380 1/22 (5%)
leucine-rich repeat 964..987 CDD:275380 7/22 (32%)
leucine-rich repeat 988..1009 CDD:275380 9/20 (45%)
leucine-rich repeat 1038..1064 CDD:275380 9/26 (35%)
leucine-rich repeat 1113..1139 CDD:275380 4/25 (16%)

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