DRSC/TRiP Functional Genomics Resources

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Protein Alignment chp and LOC1270808

DIOPT Version :10

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:XP_309529.4 Gene:LOC1270808 / 1270808 VectorBaseID:AGAMI1_014460 Length:297 Species:Anopheles gambiae


Alignment Length:319 Identity:77/319 - (24%)
Similarity:124/319 - (38%) Gaps:73/319 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 ITLMIMIWMSLARASMFDREMEETHYPPCTYNVMCTCSKSS-TDLGIVHCKNVPFPALPRM---- 75
            |.|..::.::.. ||.:.|::|      |:.:....|..|: |.:..:......||..|.:    
Mosquito     5 IALCFLVTVACG-ASAYGRKLE------CSEHREMECEISNFTIVESMDLSEYEFPDHPHLAFGT 62

  Fly    76 ----------VNQSKVFMLHMENTGLREIEPYFLQSTGMY----RLKISGNHLTEIPDDAFTGLE 126
                      |...|.....:::|...||:...||:..::    .|..|.|:..|:         
Mosquito    63 YPHSDDSTYVVTIGKELADRLQSTEKLEIQNVSLQTMVLWPNLRSLDASHNYFFEL--------- 118

  Fly   127 RSLWELILPQNDLVEIPSKSLRHLQKLRHLDLGYNHITHIQHDSFRGLEDSLQTLILRENCISQL 191
                        :|| |.::    .:||.|:|.||....|:   |.....:|:||.||.|.:..|
Mosquito   119 ------------IVE-PGQN----YQLRELNLSYNRFQSIE---FVQALPALRTLDLRHNYLESL 163

  Fly   192 MSHSFSGLLILETLDLSGNNLFEIDPNVFVDG---MPRLTRLLLTDNILSEIPYDAL-GPLKSLR 252
            ....|.....|..|:|:.|.|    ..:..||   :|||:.|||.||:||.:  ||. .....|:
Mosquito   164 SFSLFDMATELWKLNLANNRL----QTISTDGSLHLPRLSTLLLHDNLLSVL--DASEWRFSMLQ 222

  Fly   253 TLDISHNVIWSLSGNE-TYEIKASTKLNLDNLHLEYNHIEV-------LPPNSFKYFDT 303
            .|:::.|.:..||..| .:.......|.||....|..|:..       |...:..|:||
Mosquito   223 ELNVARNRLRYLSMCEVNHSFPHLQTLYLDENRWECGHLNATIRQLHQLGVKAMAYYDT 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 LRR <84..320 CDD:443914 62/236 (26%)
leucine-rich repeat 84..103 CDD:275380 5/18 (28%)
leucine-rich repeat 104..128 CDD:275380 4/27 (15%)
leucine-rich repeat 129..152 CDD:275380 3/22 (14%)
leucine-rich repeat 153..177 CDD:275380 8/23 (35%)
leucine-rich repeat 178..201 CDD:275380 8/22 (36%)
leucine-rich repeat 202..226 CDD:275380 7/26 (27%)
leucine-rich repeat 227..250 CDD:275380 10/23 (43%)
leucine-rich repeat 251..279 CDD:275380 6/28 (21%)
leucine-rich repeat 280..326 CDD:275380 8/31 (26%)
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 352..375 CDD:275380
PPP1R42 355..564 CDD:455733
leucine-rich repeat 376..401 CDD:275380
leucine-rich repeat 426..450 CDD:275378
leucine-rich repeat 451..474 CDD:275380
LRR_8 473..559 CDD:404697
leucine-rich repeat 475..524 CDD:275380
leucine-rich repeat 500..519 CDD:275380
leucine-rich repeat 525..548 CDD:275380
LRR <540..>834 CDD:443914
leucine-rich repeat 549..574 CDD:275380
leucine-rich repeat 575..598 CDD:275380
leucine-rich repeat 599..622 CDD:275380
leucine-rich repeat 623..646 CDD:275380
leucine-rich repeat 647..730 CDD:275380
leucine-rich repeat 648..673 CDD:275380
leucine-rich repeat 674..705 CDD:275380
LRR <730..1081 CDD:443914
leucine-rich repeat 731..754 CDD:275380
leucine-rich repeat 755..778 CDD:275380
leucine-rich repeat 779..802 CDD:275380
leucine-rich repeat 803..823 CDD:275380
leucine-rich repeat 852..876 CDD:275380
leucine-rich repeat 877..900 CDD:275380
leucine-rich repeat 901..925 CDD:275380
leucine-rich repeat 926..946 CDD:275380
leucine-rich repeat 947..970 CDD:275380
leucine-rich repeat 971..993 CDD:275380
leucine-rich repeat 994..1014 CDD:275380
leucine-rich repeat 1019..1042 CDD:275380
LOC1270808XP_309529.4 None
Blue background indicates that the domain is not in the aligned region.

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