DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and chadl

DIOPT Version :10

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:XP_002934783.2 Gene:chadl / 100491048 XenbaseID:XB-GENE-6050564 Length:721 Species:Xenopus tropicalis


Alignment Length:874 Identity:192/874 - (21%)
Similarity:328/874 - (37%) Gaps:240/874 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 FLTITLMIMIWMSLARASMFDREMEETHYPPCTYNVMCTCSKSSTDLGIVHCKNVPFPALPRMVN 77
            :..:||:|   ||..:..:.||         |..  :|.|....|   .|.|.|.....:|..: 
 Frog     3 WFVLTLII---MSAVKPLLCDR---------CPR--VCICDNIRT---FVACTNKNLTEVPTSI- 49

  Fly    78 QSKVFMLHMENTGLREIEPYFLQSTGMYRLKISGNHLTEIPDDAFTGLERSLWELILPQNDLVEI 142
                              |.:.|     :|.:.||.|..||:.||..:. .|..|.|.:.::..|
 Frog    50 ------------------PQYTQ-----KLDLRGNDLKVIPNGAFLSVP-YLTHLSLQKCNIERI 90

  Fly   143 PSKSLRHLQKLRHLDLGYNHITHIQHDSFRGLEDSLQTLILRENCISQLMSHSFSGLLILETLDL 207
            ...:||.|.:|.:|:||.|.|:.|..:||.|| .|||.|:|.:|.:.::...:|..|..|..|.|
 Frog    91 EEGALRGLGRLVYLNLGSNKISFIYQESFDGL-SSLQQLVLEKNRLEEIKPGAFGQLGFLNFLHL 154

  Fly   208 SGNNLFEIDPNVFVDGMPRLTRLLLTDNILSEIPYDALGPLKSLRTLDISHNVIWSLSGNETYEI 272
             |:|.....|::...|:.::..:.|::|:::.:..:|...|.:|:.|.:.||             
 Frog   155 -GDNFLVYLPDMLFQGLQQVKWIRLSNNMINVVSNEAFAALPNLKRLSLDHN------------- 205

  Fly   273 KASTKLNLDNLHLEYNHIEVLPPNSFKYFDTVNRTFFDGNPIHTLREDAFKPARIREIYMRYCGL 337
                       .|:|     ||.::......:.|.....||:..:.|:|.:.|.::::::....:
 Frog   206 -----------ELQY-----LPTDALSRMSGLTRLELGWNPMTFISEEAVQMASLKQLFLNNMAI 254

  Fly   338 TNISPVAFDSLVNSLQILDLSGNNLTKLHHKLFNNFDVLRVISMRDNKIKIQKPTETFNA-VHYT 401
            .::|..||:. ...|.::|||.|.:..:  ::....:.|..:::..|.|:......:|.. ..::
 Frog   255 QDLSFKAFER-SPQLSLIDLSNNQIRTI--QVLAGLEHLNRLNLTGNAIRCDCELRSFKQWADFS 316

  Fly   402 LLKLDL--SGD---RNDPTNLQTLR----KMRNM---------------RSLSISRLGSSSVGPE 442
            .:|:||  ||.   |.|  :|.:||    |..|.               ...|..|  |....|:
 Frog   317 KVKVDLFCSGPGHFRGD--HLDSLRAIDLKCGNFPEEDYNLPPITPKPEEESSCPR--SCDCKPD 377

  Fly   443 DF-------------KDFGVELEDLQITRASLSGIQSHAFKHVRGLKRLDFSENGISSIENDAFH 494
            |.             |.|.|:...|.:.:...:.|...||..::.:..|......|:.|:..||.
 Frog   378 DKHVLCENKFLQQIPKRFPVDTTLLDLRKNVFNAIHKGAFSEMKNVASLHLQSCQINEIQPGAFA 442

  Fly   495 EIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRI 559
            .: .:|:.|.:||                         ||:||:....|.....:..|.|..||.
 Frog   443 GM-KNLVYLYLSH-------------------------NHLSSIDPEVFRDAPMIGYLYLDHNRF 481

  Fly   560 EQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELE 624
            .::.||||:  ....|..:.:::|.::|:|.:.....:.|..:::..|.|:.|...||.|..:||
 Frog   482 TRLSKGTFK--FLPNLFSLHMQYNSISSLSDNFMSGADKLHWVYMTGNNINYIASSAFKNNKDLE 544

  Fly   625 YLSLRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYN 689
            .|.|..|.:..:..::.:.||.|                                 |::|     
 Frog   545 KLHLDENLLMEVPTQAIKGLPLL---------------------------------NELR----- 571

  Fly   690 SSWSGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPH 754
                                 ||.|.|..|..|.|.|...||.||:|.                 
 Frog   572 ---------------------LSKNLIRSIGNGAFLPVARSLQHLYLN----------------- 598

  Fly   755 LQWLDLSYNWIHELDFDAF-KNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHN----HLR 814
                ||....|....|... :..|.|.|   .:|.|.:||.  .||..||.:::.::|    ..|
 Frog   599 ----DLGLEQISSGGFSGLGQGIKSLHL---DNNKLQNIPN--MKPFTGLEVINLANNPFHCDCR 654

  Fly   815 GLPDNLFYNGGMEKLDVSHNMMLKIPSSS 843
            .||.:.:.|    .|::........|||:
 Frog   655 LLPLHKWIN----SLNLKVGATCAAPSSA 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 LRR <84..320 CDD:443914 58/235 (25%)
leucine-rich repeat 84..103 CDD:275380 2/18 (11%)
leucine-rich repeat 104..128 CDD:275380 8/23 (35%)
leucine-rich repeat 129..152 CDD:275380 7/22 (32%)
leucine-rich repeat 153..177 CDD:275380 11/23 (48%)
leucine-rich repeat 178..201 CDD:275380 7/22 (32%)
leucine-rich repeat 202..226 CDD:275380 7/23 (30%)
leucine-rich repeat 227..250 CDD:275380 4/22 (18%)
leucine-rich repeat 251..279 CDD:275380 4/27 (15%)
leucine-rich repeat 280..326 CDD:275380 9/45 (20%)
leucine-rich repeat 327..348 CDD:275380 3/20 (15%)
leucine-rich repeat 352..375 CDD:275380 5/22 (23%)
PPP1R42 355..564 CDD:455733 50/246 (20%)
leucine-rich repeat 376..401 CDD:275380 4/25 (16%)
leucine-rich repeat 426..450 CDD:275378 7/51 (14%)
leucine-rich repeat 451..474 CDD:275380 4/22 (18%)
LRR_8 473..559 CDD:404697 17/85 (20%)
leucine-rich repeat 475..524 CDD:275380 9/48 (19%)
leucine-rich repeat 500..519 CDD:275380 4/18 (22%)
leucine-rich repeat 525..548 CDD:275380 5/22 (23%)
LRR <540..>834 CDD:443914 64/298 (21%)
leucine-rich repeat 549..574 CDD:275380 8/24 (33%)
leucine-rich repeat 575..598 CDD:275380 4/22 (18%)
leucine-rich repeat 599..622 CDD:275380 7/22 (32%)
leucine-rich repeat 623..646 CDD:275380 6/22 (27%)
leucine-rich repeat 647..730 CDD:275380 11/82 (13%)
leucine-rich repeat 648..673 CDD:275380 0/24 (0%)
leucine-rich repeat 674..705 CDD:275380 2/30 (7%)
LRR <730..1081 CDD:443914 29/119 (24%)
leucine-rich repeat 731..754 CDD:275380 4/22 (18%)
leucine-rich repeat 755..778 CDD:275380 4/23 (17%)
leucine-rich repeat 779..802 CDD:275380 8/22 (36%)
leucine-rich repeat 803..823 CDD:275380 5/23 (22%)
leucine-rich repeat 852..876 CDD:275380
leucine-rich repeat 877..900 CDD:275380
leucine-rich repeat 901..925 CDD:275380
leucine-rich repeat 926..946 CDD:275380
leucine-rich repeat 947..970 CDD:275380
leucine-rich repeat 971..993 CDD:275380
leucine-rich repeat 994..1014 CDD:275380
leucine-rich repeat 1019..1042 CDD:275380
chadlXP_002934783.2 LRR 38..>300 CDD:443914 73/320 (23%)
leucine-rich repeat 53..76 CDD:275380 9/28 (32%)
leucine-rich repeat 77..100 CDD:275380 7/22 (32%)
leucine-rich repeat 101..124 CDD:275380 11/23 (48%)
leucine-rich repeat 125..148 CDD:275380 7/22 (32%)
leucine-rich repeat 149..172 CDD:275380 7/23 (30%)
leucine-rich repeat 173..196 CDD:275380 4/22 (18%)
leucine-rich repeat 197..220 CDD:275380 8/51 (16%)
leucine-rich repeat 221..243 CDD:275380 5/21 (24%)
leucine-rich repeat 244..267 CDD:275380 3/23 (13%)
leucine-rich repeat 268..287 CDD:275380 5/20 (25%)
PCC 272..>346 CDD:188093 19/77 (25%)
leucine-rich repeat 290..337 CDD:275380 12/48 (25%)
LRRNT 368..401 CDD:214470 7/34 (21%)
LRR 399..>649 CDD:443914 76/362 (21%)
leucine-rich repeat 399..422 CDD:275380 4/22 (18%)
leucine-rich repeat 423..446 CDD:275380 5/23 (22%)
leucine-rich repeat 447..470 CDD:275380 9/47 (19%)
leucine-rich repeat 471..494 CDD:275380 8/24 (33%)
leucine-rich repeat 495..518 CDD:275380 4/22 (18%)
leucine-rich repeat 519..542 CDD:275380 7/22 (32%)
leucine-rich repeat 543..566 CDD:275380 6/22 (27%)
leucine-rich repeat 567..591 CDD:275380 11/82 (13%)
leucine-rich repeat 592..615 CDD:275380 8/43 (19%)
leucine-rich repeat 617..639 CDD:275380 9/26 (35%)
leucine-rich repeat 640..651 CDD:275378 1/10 (10%)
LRRCT 647..693 CDD:214507 9/37 (24%)
Blue background indicates that the domain is not in the aligned region.

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