DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mesh and Susd2

DIOPT Version :9

Sequence 1:NP_001163782.1 Gene:mesh / 43688 FlyBaseID:FBgn0051004 Length:1454 Species:Drosophila melanogaster
Sequence 2:NP_082166.3 Gene:Susd2 / 71733 MGIID:1918983 Length:820 Species:Mus musculus


Alignment Length:836 Identity:262/836 - (31%)
Similarity:390/836 - (46%) Gaps:116/836 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   428 IGSCNKD-IDAALLPLTFAPESGNMLGG-----QVVNITGPCFDPAIRVTCHFDTESV--LGTYV 484
            :|:|.:| :|..   |...|.||:|:||     |.:..|    ||...|.|.| .||:  ||...
Mouse    49 LGTCCEDFLDYC---LEILPSSGSMMGGKDFVVQHLKWT----DPTDGVICRF-KESIQTLGYVD 105

  Fly   485 DRNRVICVQPYLKAEGYIRFQISVGTQR-FKWRGKYFVETPAAATEK-----------IFFTTDD 537
            |..:|.|:.|.|...|||.|.||:...| |...|.:....|...:|.           .::.|.|
Mouse   106 DFYQVHCISPLLYESGYIPFTISMDNGRSFPHAGTWLAAHPYKVSESEKSQLVNETHWQYYGTSD 170

  Fly   538 VHKKNPAEIRITWNQYNLTSNANANVMISLWGYRETKIEP-------QLEYIDVIEASYSNSGSY 595
            ..    ..:.:||:...|.:.|   |.|.||||.||. :|       :..|:..:..:..|:|.:
Mouse   171 TR----GNLNLTWDTSALPTPA---VTIELWGYEETG-KPYSGNWTSKWSYLYPLATNIPNTGFF 227

  Fly   596 VITPS----NYINRNNINRDMQFGFLQINLTQPDQYSGLAISPVLWSRPIPLAWYMAPQWERQHG 656
            ..||.    .|       :..:.|.|:|:.::  .|.|......||:....|||::...: |...
Mouse   228 TFTPKPASPQY-------QRWKVGALRISSSR--NYPGEKDVRALWTNDHALAWHLGDDF-RADS 282

  Fly   657 KRWARALCDNWIRADRFLRNFAADLPLCPCTLDQAVLDKGRFRPDRECDKDSNPSCLRHRGAIHC 721
            ..||||.|..|...:..|.||..:||.|||||.||..|.|||..|..||.:....|..|.||:||
Mouse   283 VAWARAQCLAWEALEDQLPNFLTELPDCPCTLAQARADSGRFFTDYGCDIEHGSVCTYHPGAVHC 347

  Fly   722 V--VSGTPVAQGAEQQCCYDRYGFLMLTYDQMWGSRPRRVHNLGKMPWNEASKVPSLSMWFHDMR 784
            |  |..:| ..|:.|||||...|..:||.|...||.|.|.|:.|..|:....:||.:|.|.:|:.
Mouse   348 VRSVQASP-RYGSGQQCCYTAAGTQLLTSDSTSGSTPDRGHDWGAPPYRTPPRVPGMSHWLYDVI 411

  Fly   785 PFYSCCYWQEEQAVGCETYRFERRPSQDCVAYQAPGIAGVFGDPHFVTFDGTAYTFNGLGEFVLA 849
            .||.||.|..|    |..| .:||||.||..|:.|.:|..||||||||||||:::|:|.||:||.
Mouse   412 SFYYCCLWAPE----CPRY-MKRRPSSDCRNYRPPRLASAFGDPHFVTFDGTSFSFSGNGEYVLL 471

  Fly   850 RSVDESNKFEVQGRFEQLPVNYYGEVKATQLTAVAMRGNTTTTIEVRLRPLHARWRYRLDVLADG 914
            .:.  .:...||||.:...:....:.:.|.|||||::.:.:..|||||    |.....|:||.:.
Mouse   472 ETT--LSDLRVQGRAQPGRMPNGTQARGTGLTAVAVQEDNSDVIEVRL----AGGSRVLEVLLNQ 530

  Fly   915 RRVYFDRESLKFQHFDGVTVYTPTYLLNQSQVVVQFDAGIGVEVVENEGYMTGRVFLPWKFINKT 979
            :.:.|..::  :....|:.:....    |.:|.:...:|.|:||.....:::..:.||.||:..|
Mouse   531 KVLSFTEQN--WMDLKGMFLSVAA----QDKVSIMLSSGAGLEVGVQGPFLSVSILLPEKFLTHT 589

  Fly   980 AGLFGNWSFNKLDDFMLPNGQVAQLNLNDLRSIHTNFGIKWMLTDREVPGVGAALFKRE-----F 1039
            .||.|..:.|..|||.|.||||..||.:..:..  .||..|.:::.      ::||..:     :
Mouse   590 RGLLGTLNNNPRDDFTLRNGQVLPLNASAQQVF--QFGADWAVSNT------SSLFTYDSWLLVY 646

  Fly  1040 GRMSGYYANATFQPNYVLDPAD-FLPANRSYDLERAEELCGECMQCQYDYAMTLNRDLAHFTKNY 1103
            ..:.|...|..|:|   |.|.: .|..:::.|:.|   ||.....|..|...|.:..:.:.|:  
Mouse   647 QFVYGPKHNPNFKP---LFPDETTLSPSQTEDVAR---LCEGDRFCILDVMSTGSSSVGNATR-- 703

  Fly  1104 YDTIVNMQAENAVR----VVSCGVLQTPRFGRKLSFDFMPGAKVSFECNEGFILIGDQRRECLSN 1164
               |.:...::.::    |||||.|..|..|.|....::.|:.|.|.||.|:.|:|.:...|.::
Mouse   704 ---IAHQLHQHRLKSLQPVVSCGWLPPPANGHKEGLRYLEGSVVRFSCNNGYSLVGPESSTCQAD 765

  Fly  1165 GLWNIPEYGYTECLREVYYTRRVAFIAIGIIF--LVICPLMLCIVCGVYRYRQKQL 1218
            |.|::|.   .||.....||     :.:.|||  |.|..|:..|...::|.|:..:
Mouse   766 GKWSMPT---PECQPGRSYT-----VLLSIIFGGLAIVALISIIYMMLHRRRKSNM 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
meshNP_001163782.1 NIDO 259..419 CDD:214712
AMOP 660..805 CDD:281737 63/146 (43%)
VWD 811..999 CDD:214566 63/187 (34%)
CCP 1121..1171 CDD:214478 17/49 (35%)
Susd2NP_082166.3 Somatomedin_B 27..62 CDD:279385 4/15 (27%)
AMOP 286..428 CDD:281737 63/147 (43%)
VWD 444..609 CDD:214566 59/176 (34%)
CCP 722..776 CDD:153056 19/56 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831622
Domainoid 1 1.000 116 1.000 Domainoid score I5973
eggNOG 1 0.900 - - E1_KOG4291
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H10481
Inparanoid 1 1.050 316 1.000 Inparanoid score I2537
Isobase 1 0.950 - 0 Normalized mean entropy S7078
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007412
OrthoInspector 1 1.000 - - oto92856
orthoMCL 1 0.900 - - OOG6_107727
Panther 1 1.100 - - O PTHR13802
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2922
SonicParanoid 1 1.000 - - X5542
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.730

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