DRSC/TRiP Functional Genomics Resources

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Protein Alignment mesh and Csmd2

DIOPT Version :10

Sequence 1:NP_001163782.1 Gene:mesh / 43688 FlyBaseID:FBgn0051004 Length:1454 Species:Drosophila melanogaster
Sequence 2:XP_063144694.1 Gene:Csmd2 / 313040 RGDID:1565728 Length:3640 Species:Rattus norvegicus


Alignment Length:608 Identity:123/608 - (20%)
Similarity:178/608 - (29%) Gaps:245/608 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   810 SQDCV-AYQAPGIAGV-----------FGDPHFVTFDGTAYTFNGLGEFV--LARSVDESNKFEV 860
            ||||| ....|...||           ||| :...:||...|...||.|.  |::.:..|:..:|
  Rat  2236 SQDCVWQITVPIGHGVHLNLSLLQIEPFGD-YITVWDGPQQTSLQLGVFTRSLSKKIAYSSSNQV 2299

  Fly   861 QGRFEQLPVNYYGEVKATQLTAVAMRGNTTTTI-----------------EVRLRPLHARWRYRL 908
            ..:|.:....  |.:.|...||..:......||                 .||.|.|........
  Rat  2300 LLKFHRDTAT--GGIFAIAFTAYPLTKCPPPTILPNAEVVTENEEFNIGDIVRYRCLPGFTLVGS 2362

  Fly   909 DVLADGRRVYFDRESLKFQHFDG----VTVYTPT---------YLLNQS---------------Q 945
            ::|......|.        .|:|    ..|:.||         .:|:||               :
  Rat  2363 EILTCKLGTYL--------QFEGPPPICEVHCPTNELLTDSTGVILSQSYPGSYPQFQTCSWLVR 2419

  Fly   946 VVVQFDAGIGVEVVENEGY-------------------MTGRVFLPWKFINKTAGLFGNWS---- 987
            |..:::..|.||...:|..                   ::|....|....:.:..::..||    
  Rat  2420 VEPEYNVSITVEYFLSEKQYDEFEIFDGPSGQSPLLKALSGNYSAPLIVTSSSNSVYLRWSSDHA 2484

  Fly   988 FNK------------------LDDFML------PNGQVAQLNLNDLRSIHTNFGIKWMLTDREVP 1028
            :|:                  |..|:|      |.|           |||  ||..   |...:.
  Rat  2485 YNRKGFKIRYSAPYCSLPKAPLHGFILGQTTTQPGG-----------SIH--FGCN---TGYRLV 2533

  Fly  1029 GVGAALFKREFGRMSGYYA---------------------NATFQPNYVLDPADFLPANRSYDLE 1072
            |...|:..|   ...||:.                     ...|...|.:........|..|.|:
  Rat  2534 GHSMAICTR---HPQGYHLWSEAIPLCQAISCGLPAAPKNGIVFGKEYTVGTKAVYSCNEGYHLQ 2595

  Fly  1073 RAEELCGECM------------QC------------------------QYDYAMTLNRDLAHFTK 1101
            ...|...||:            ||                        ||.:...|   :.....
  Rat  2596 TGAEATTECLDTGLWSNSNVPPQCVPVTCPDISSISVEHGRWRLIFETQYQFQAQL---MLICDP 2657

  Fly  1102 NYYDT---IVNMQAEN---------AVRVVSCGVLQTPRFGRKLSFDFMPGAKVSFECNEGFILI 1154
            .||.|   ::..||..         ..:::|||.|.||..|.::....:.||...|.||.|:.|:
  Rat  2658 GYYYTGQRVIRCQANGRWSLGESMPTCQIISCGELPTPPSGHRIGTMSVYGATAIFSCNSGYTLV 2722

  Fly  1155 GDQRRECLSNGLWNIPEYGYTECLR-----------------------EVYYTRRVAFIAIGIIF 1196
            |.:.|||:|||||:..|   ..||.                       .|.|..|..|..|| :.
  Rat  2723 GSRVRECMSNGLWSGSE---VRCLAGHCGTPEPIVNGHINGENFNYRGSVVYQCRAGFRLIG-MS 2783

  Fly  1197 LVIC----------PLMLCIVCG 1209
            :.||          |..:.|.||
  Rat  2784 VRICQQDHHWSGKTPFCVPITCG 2806

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
meshNP_001163782.1 NIDO 259..419 CDD:214712
TIG 446..511 CDD:460355
AMOP 660..803 CDD:461048
VWD 811..999 CDD:214566 54/293 (18%)
CCP 1121..1171 CDD:214478 22/49 (45%)
Csmd2XP_063144694.1 None
Blue background indicates that the domain is not in the aligned region.

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