DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mesh and Sned1

DIOPT Version :9

Sequence 1:NP_001163782.1 Gene:mesh / 43688 FlyBaseID:FBgn0051004 Length:1454 Species:Drosophila melanogaster
Sequence 2:NP_766051.4 Gene:Sned1 / 208777 MGIID:3045960 Length:1403 Species:Mus musculus


Alignment Length:426 Identity:110/426 - (25%)
Similarity:167/426 - (39%) Gaps:91/426 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 LNFQLPFYGFRFNYTRLSLNGYLEFSDPPEYLTYPLVFPI-KDWPAKRDPSFMGIFFSKCRVGRI 259
            |:...||:|...:...::.||.:.|.......| |:.||| ||               :|.|...
Mouse    56 LSVPFPFFGAEHSGLYVNNNGIISFLKEVSQFT-PVAFPIAKD---------------RCVVAAF 104

  Fly   260 YPSDIDQRTPG-VYFRVERDLMGRTDRFGVEVRERTMWDIRQGVVGADTFIPKHVVIATWKNVSF 323
            : :|:|.|..| ||:|...|         ..:..|...|||:.......|....|.:|||..|:|
Mouse   105 W-ADVDNRRAGDVYYREATD---------PAMLNRATEDIRRYFPELPDFSATWVFVATWYRVTF 159

  Fly   324 AGGIDNSLYTTNTFQMVLATDEVYTYIIFNYAVLNWL--SHTEAGGDTTKGEGGVPAYVGFNAGN 386
            .||..:|  ..||||.||.||..:::.||||..:.|.  :|..:||| |.|.||:.|..|||||:
Mouse   160 FGGSSSS--PVNTFQTVLITDGRFSFTIFNYESILWTTGTHASSGGD-TDGLGGIAAQAGFNAGD 221

  Fly   387 GTQAYEYNPYSQNMVIRDLANRGWAN-GFPGRHIFRVDE-QILIGSCNKDIDAALL--PLTFAPE 447
            |.:.:.. |.|:...:.::...  .| |.|||..||:|: |:.:|.|.......|:  |.     
Mouse   222 GHRYFNI-PGSRTADMAEVETT--TNVGVPGRWAFRIDDAQVRVGGCGHTTSVCLVLRPC----- 278

  Fly   448 SGNMLGGQVVN--ITG------PCFDPAIRVTCHFDTESVLGTYVDRNRVICVQPYLKAEGYIRF 504
               :.||:.::  :||      .|........||.|... ..::..:|...|..           
Mouse   279 ---LNGGKCIDDCVTGNPSYTCSCLAGFTGRRCHLDVNE-CASHPCQNGGTCTH----------- 328

  Fly   505 QISVGTQRFKWRGKYFVETPAAATEKIFFTTDDVHKKNPAEIRITWNQYNLTSNANANVMISLWG 569
                |...|..:.....:.|...:           .::|.:.::..|.....:.:::.|.:...|
Mouse   329 ----GVNSFSCQCPAGFKGPTCES-----------AQSPCDNKVCQNGGQCQAESSSAVCVCQAG 378

  Fly   570 YRETKIEPQLEYIDVIEAS---YSNSGSYVITPSNY 602
            |.....|     .||.|.|   ..|.||.|....||
Mouse   379 YTGATCE-----TDVDECSSDPCQNGGSCVDLVGNY 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
meshNP_001163782.1 NIDO 259..419 CDD:214712 57/163 (35%)
AMOP 660..805 CDD:281737
VWD 811..999 CDD:214566
CCP 1121..1171 CDD:214478
Sned1NP_766051.4 NIDO 104..260 CDD:214712 60/171 (35%)
EGF_CA 272..308 CDD:238011 7/43 (16%)
EGF_CA 311..347 CDD:238011 6/51 (12%)
EGF_CA 387..423 CDD:238011 10/23 (43%)
EGF_CA 433..464 CDD:238011
EGF_CA 545..577 CDD:238011
EGF_CA 585..616 CDD:238011
EGF_CA 621..655 CDD:238011
EGF_CA <664..693 CDD:238011
CCP 698..752 CDD:153056
EGF_CA 754..789 CDD:238011
EGF_CA 793..827 CDD:238011
EGF_CA 830..865 CDD:238011
fn3 908..988 CDD:278470
FN3 1005..1084 CDD:214495
fn3 1106..1184 CDD:278470
EGF_CA 1311..1342 CDD:238011
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 69 1.000 Domainoid score I9601
eggNOG 1 0.900 - - E1_KOG4291
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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