DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mesh and susd2

DIOPT Version :9

Sequence 1:NP_001163782.1 Gene:mesh / 43688 FlyBaseID:FBgn0051004 Length:1454 Species:Drosophila melanogaster
Sequence 2:XP_031748710.1 Gene:susd2 / 105946288 XenbaseID:XB-GENE-5887491 Length:1591 Species:Xenopus tropicalis


Alignment Length:1322 Identity:348/1322 - (26%)
Similarity:527/1322 - (39%) Gaps:366/1322 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 LYDV----------DNSGYNWD--PNNN---VAPPTTYSTAAGGYTITAARLAELRSNFMYWYFD 171
            :|||          ||..|..|  |:::   ..||    .||.|:.         ..:|:.:...
 Frog   405 MYDVVTFYYCCLWSDNCQYYMDLRPSSDCRTYKPP----KAASGFG---------DPHFVTFDGS 456

  Fly   172 KDMYGGRGDYQFDIHASMTQLHKNLNFQLPFYGFRF------NYTRLSLNGYLEFSDPPE----- 225
            |..:.|:|:|..     ::..||:|:.|.....|..      |:.:  :|..:.|.|..:     
 Frog   457 KYTFNGKGEYTL-----VSSSHKSLSIQARTKAFTVTKPDTGNFGQ--INAEIHFDDRADRSEVH 514

  Fly   226 -------------------------------YLTYPLV-FPIKDWPAKRDPSFMGIFFSKC---R 255
                                           .|...:: |..:.|     ...:|:|....   .
 Frog   515 AAGLCSVAMQEDDSDVIEVRVKDGSSHELETLLNQEVISFEEQSW-----MDLVGVFVYSAISSN 574

  Fly   256 VGRIYPSDIDQRTPGVYFRVERDLMGRTDRFGVEVRER------------TMWDIRQGVVG---- 304
            |..::||..                      |:|||.|            ...:..||::|    
 Frog   575 VTVMFPSGA----------------------GIEVRRREDFLSVNVLLPDDFMNQTQGLLGVMNN 617

  Fly   305 --ADTFIPKHVVIATWKNVS-----------FAGGID------NSLYT--------------TNT 336
              ||.|        |::|.:           |..|.|      :||:|              .:|
 Frog   618 NPADDF--------TFRNGTSLPPNATPVELFQLGADWAVTNESSLFTYDSQELINNSHVKHDHT 674

  Fly   337 FQMVLATDE----------------------VY----------TYIIFNYAVLN--------WLS 361
            ||...:.:|                      .|          ::::.:..|.|        |::
 Frog   675 FQPTFSFEENPSEPLLELCGDDEFCRFDGLATYDLNVANATKISFLVHSNLVKNLKPEVSCGWIA 739

  Fly   362 HTEAGG--DTTKGEGGVPAYVGF--NAG---NGTQAYEYNPYSQNMVIRDLANRGWANGFPGRHI 419
            ..|.|.  .||...|.|   |.|  |||   |||:            :|.....|..:|...   
 Frog   740 PPENGEKIGTTYLAGSV---VQFKCNAGFIMNGTK------------LRTCLPDGTWSGDAA--- 786

  Fly   420 FRVDEQILIGS--------------CNKDI----------DAALLPLTFAPESGNMLGGQVVNIT 460
                 |.|:||              |:..:          |.....:..|||||.::|||...:.
 Frog   787 -----QCLVGSKDSCSSQCGVILQECSCHVTCENLGTCCPDYRTFCIRIAPESGLLMGGQDFMVL 846

  Fly   461 GPCFDPAIRVTCHFDTESVLGTYVDRN-RVICVQPYLKAEGYIRFQISV-GTQRFKWRGKYFVET 523
            ...|:.:..|.|.|.:|.:...|||:: ...|:.|.|...|.|..::|. |...:.:.|.:....
 Frog   847 NVSFNRSSDVICRFRSEILTDGYVDKDGHAHCISPLLLETGRISLEVSADGGHSYPFSGTWLSVH 911

  Fly   524 PAAATEKIFFTTDDVHKKNPAEIRITWNQYNLTSNANANVM--------------ISLWGYRETK 574
            |....|....|..:..|         | ||..|.|.:..:.              |.:|||.||.
 Frog   912 PGKVMESEKCTLVNETK---------W-QYYGTPNYDGTLTVKWDSDTFEDKFLNIEVWGYEETG 966

  Fly   575 IEP-------QLEYIDVIEASYSNSGSYVITPSNYINRNNINRDMQFGFLQINLTQPDQY-SGLA 631
             ||       ..:|:..:...:.|:||:...|......::.   .:||.|::.   |.|| .|..
 Frog   967 -EPYSSSWSGSWKYLYSLARGFPNNGSFTFCPQPAKPEHSA---FEFGSLRLT---PSQYGEGQW 1024

  Fly   632 ISPVLWSRPIPLAWYMAPQWERQHGKRWARALCDNWIRADRFLRNFAADLPLCPCTLDQAVLDKG 696
            ....|||....:||::...: |:....||:..|.||.:.|:.|.:|.:::..|||||.|:..|.|
 Frog  1025 NVHSLWSVDHAMAWHLGEDF-RRDSAAWAQDKCFNWHQNDKKLPDFLSEIIDCPCTLAQSRADTG 1088

  Fly   697 RFRPDRECDKDSNPSCLRHRGAIHCV--VSGTPVAQGAEQQCCYDRYGFLMLTYDQMWGSRPRRV 759
            ||.||..||..|...|..|.||:|||  :.|:|: .||.||||||..||.:||.|.:.||.|.|.
 Frog  1089 RFHPDYGCDIGSGSVCTYHPGAVHCVRGIYGSPL-YGAGQQCCYDSRGFQVLTSDSVGGSTPDRG 1152

  Fly   760 HNLGKMPWNEASKVPSLSMWFHDMRPFYSCCYWQEEQAVGCETYRFERRPSQDCVAYQAPGIAGV 824
            |:.|..|:.:..:||..|.|.:|:..||.||.|.:    .|:.| .|.|||.||.:|:.|.:|..
 Frog  1153 HDWGSPPYRKPPRVPGFSHWIYDVITFYYCCLWSD----NCQKY-LELRPSSDCRSYKPPKVASA 1212

  Fly   825 FGDPHFVTFDGTAYTFNGLGEFVLARSVDESNKFEVQGRFEQLPVNYYGEVKATQLTAVAMRGNT 889
            ||||||:||||..:||.|.||:.|..|...|  ..:|||.:...::....|..|..:::|||...
 Frog  1213 FGDPHFLTFDGAKFTFKGRGEYTLVTSPYSS--LNIQGRTQAALLSNGSTVPVTGFSSIAMREGE 1275

  Fly   890 TTTIEVRLRPLHARWRYRLDVLADGRRVYFDRESLKFQHFDGVTVYTPTYLLNQSQVVVQFDAGI 954
            :..||||    .|....:|:||.:...|:|||..:   ..:||.:::.|    ...|.|.|.:|.
 Frog  1276 SDVIEVR----RAASSEKLEVLLNNEVVHFDRSWI---DLNGVFLFSGT----NENVTVMFPSGA 1329

  Fly   955 GVEVVENEGYMTGRVFLPWKFINKTAGLFGNWSFNKLDDFMLPNGQVAQLNLNDLRSIHTNFGIK 1019
            |.||...||::...|.||.:|||:|.||.|..::|..|||...||.....|.......  ..|..
 Frog  1330 GAEVRGREGFLGVTVLLPEEFINQTQGLLGVMNYNATDDFSFRNGTTLPPNATPQEIF--ELGAH 1392

  Fly  1020 WMLTDREVPGVGAALF----KREFGRMSGYYANATFQP--NYVLDPADFLPANRSYDLERAEELC 1078
            |.:|:.     ..:||    |.......|...:..|.|  |...||.|.|.       |..:.||
 Frog  1393 WAVTNS-----SNSLFTYDSKFLIENYQGKPHDQDFVPIFNVPEDPTDPLK-------EPVDTLC 1445

  Fly  1079 GECMQCQYDYAMTLNRDLA--HFTK----NYYDTIVNMQAENAVRVVSCGVLQTPRFGRKLSFDF 1137
            |....|::| |:| .||||  :.||    ::.|.:.::||     |||||.:..|..|:|....:
 Frog  1446 GSDEFCRFD-ALT-TRDLAIGNATKLSHDSHKDFVKSLQA-----VVSCGWIGAPANGKKEGTGY 1503

  Fly  1138 MPGAKVSFECNEGFILIGDQRRECLSNGLWNIPEYG-YTECLREVYYTRRVAFIAIGIIFLVICP 1201
            :.|::|:|.||.|::|.|...|.|..:|.|:    | .::|:     |..:..|.:|.:|..:..
 Frog  1504 LKGSEVTFSCNRGYMLSGSSTRTCQPDGNWS----GQLSQCV-----TDNILGIVLGSVFGFLTL 1559

  Fly  1202 LMLCIVCGVY-RYRQKQLKEDP 1222
            |:|.::..:: |.|:|:.|..|
 Frog  1560 LILIVLIALHERNRKKKKKSLP 1581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
meshNP_001163782.1 NIDO 259..419 CDD:214712 46/255 (18%)
AMOP 660..805 CDD:281737 63/146 (43%)
VWD 811..999 CDD:214566 69/187 (37%)
CCP 1121..1171 CDD:214478 17/49 (35%)
susd2XP_031748710.1 Somatomedin_B 25..58 CDD:395820
AMOP 283..426 CDD:397723 6/20 (30%)
VWD 443..629 CDD:413350 36/236 (15%)
CCP 735..788 CDD:153056 18/75 (24%)
Somatomedin_B 794..827 CDD:395820 2/32 (6%)
AMOP 1052..1193 CDD:397723 63/146 (43%)
VWD 1200..1374 CDD:413350 69/186 (37%)
CCP 1487..1541 CDD:153056 18/57 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 128 1.000 Domainoid score I5242
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D296951at33208
OrthoFinder 1 1.000 - - FOG0007412
OrthoInspector 1 1.000 - - oto103121
Panther 1 1.100 - - O PTHR13802
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5542
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.110

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