DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mesh and sned1

DIOPT Version :9

Sequence 1:NP_001163782.1 Gene:mesh / 43688 FlyBaseID:FBgn0051004 Length:1454 Species:Drosophila melanogaster
Sequence 2:XP_017212114.1 Gene:sned1 / 100001751 ZFINID:ZDB-GENE-100913-1 Length:1374 Species:Danio rerio


Alignment Length:648 Identity:155/648 - (23%)
Similarity:235/648 - (36%) Gaps:185/648 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 LNFQLPFYGFRFNYTRLSLNGYLEFSDPPEYLTYPLVFPIKDWPAKRDPSFMGIFFSKCRVGRIY 260
            ::...||:|.|.....::.||.:.|.......| |:.|||.               ...||...:
Zfish    55 ISVAFPFFGERHTGLYVNNNGLVSFLREVSQFT-PVAFPIA---------------GDRRVVAPF 103

  Fly   261 PSDIDQRTPG-VYFRVERDLMGRTDRFGVEVRERTMWDIRQGVVGADTFIPKHVVIATWKNVSFA 324
            .:|:|.|..| |::|..:|         ..:..|...|..:......||:...|:||||..|:|.
Zfish   104 WADVDNRRAGKVFYRESKD---------PAILRRATADTNRYFPEFPTFVTTWVLIATWHQVTFF 159

  Fly   325 GGIDNSLYTTNTFQMVLATDEVYTYIIFNYAVLNWLS--HTEAGGDTTKGEGGVPAYVGFNAGNG 387
            ||  :|:...||||:||.||...::.||.|..:.|.:  |..:|||.. |.||:.|..|||||:|
Zfish   160 GG--SSITPVNTFQVVLITDGELSFTIFQYHNITWTTGMHATSGGDLA-GLGGIAAQAGFNAGDG 221

  Fly   388 TQAYEYNPYSQNMVIRDLANRGWAN-GFPGRHIFRVDE-QILIGSCNKDIDAALLPLTFAPESGN 450
            .:.:.. |.|:...|.::...  .| |:|||.:||:|: .:.:|.||   |:|.:.....|... 
Zfish   222 KRYFNI-PGSRTDDIVEIETT--TNVGYPGRWVFRIDDSHVQVGGCN---DSASVCANLRPCRN- 279

  Fly   451 MLGGQVVN--ITGPCFDPAIRVTC-----------HFDTESVL-----GTYVDR-NRVICVQPYL 496
              ||:.::  |||   :|:...:|           ..|..|..     ||.||: |..||:.|. 
Zfish   280 --GGRCIDDCITG---NPSFTCSCLAGFTGRRCQIEVDECSSYPCQNGGTCVDKINHFICLCPV- 338

  Fly   497 KAEGYIRFQISV------------GTQRFKWRGKYFVETPAAATEKIFFTTDDVHK------KNP 543
               |:|......            |.|..:..|.:..:..|..|.  |....|:::      .|.
Zfish   339 ---GFIGATCETDIDECQETPCLNGAQCIQGVGNFTCKCQAGYTG--FLCESDINECMSVPCLNG 398

  Fly   544 AEIRITWNQYNLTSNANANVMISLWGYRETKIEPQLEYIDVIE---------------ASYSNSG 593
            .......|.|..|..||         :..:..|.:|...|...               ..|:|||
Zfish   399 GVCEDLVNNYTCTCTAN---------FTGSACETELVVADAANQTESCVGEICNKHQICEYTNSG 454

  Fly   594 SYVIT--PSNYINRNNINRDMQFGFLQINLTQ----PDQYSGL------AISPVLWSRPIPLAWY 646
            :|..|  |..|.:........|.|.:.:::..    |..::||      ..:|...:||.|..  
Zfish   455 NYSCTCMPGYYGDNCEEECPCQNGGICVDVNGTCDCPTGFTGLYCQFEVTQTPCSNNRPCPDG-- 517

  Fly   647 MAPQWERQHGKRWARALCDNWIRADRFLRNFAADLPLCPCTLDQAVLDKGRF----RPDRECD-- 705
             .|..|  :|..:                       ||.|... |..|...|    :|...||  
Zfish   518 -GPCLE--YGGTY-----------------------LCTCQTG-AEFDHKDFYPYVQPQSACDSS 555

  Fly   706 ----------KDSNPSC-LRH--RGAIHC------VVSGTPVAQG------AEQQCCYDRYGF 743
                      :|.:..| .:|  ||. ||      :.:.:|...|      |:...|...|.|
Zfish   556 PCQNGGYCYERDGDYICECKHGYRGK-HCERVRLSICASSPCRNGGSCKEEADSYHCVCPYRF 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
meshNP_001163782.1 NIDO 259..419 CDD:214712 55/163 (34%)
AMOP 660..805 CDD:281737 22/115 (19%)
VWD 811..999 CDD:214566
CCP 1121..1171 CDD:214478
sned1XP_017212114.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 60 1.000 Domainoid score I10565
eggNOG 1 0.900 - - E1_KOG4291
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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