DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15556 and Adgrd1

DIOPT Version :9

Sequence 1:NP_001247379.1 Gene:CG15556 / 43681 FlyBaseID:FBgn0039821 Length:755 Species:Drosophila melanogaster
Sequence 2:XP_001070157.3 Gene:Adgrd1 / 689257 RGDID:1594795 Length:903 Species:Rattus norvegicus


Alignment Length:646 Identity:151/646 - (23%)
Similarity:244/646 - (37%) Gaps:143/646 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 MKICQKVMSTDNETLRVSADANATNALLSNFED-------------YLDELSPTI--LKLNTTIF 249
            |.....||.||           |.:.:::|..:             ||..:|.::  ..|:....
  Rat   293 MPTAHPVMPTD-----------AYHPIITNLTEERKHFQRPRTVLRYLQNVSLSLPNKSLSEETA 346

  Fly   250 ANSTEFTFHPLFDMGVIVLKTSELRVFFVDPEVRNVS-GIVNFSGGNMSHFEMLHLSDNEEDI-- 311
            .|.|| ||  |..:|.::|..|.:.|    .|...|: |:|:.....|.|... :|...|..|  
  Rat   347 LNLTE-TF--LRTVGEVLLLPSWIHV----SEDNAVTLGLVDTIDTVMGHISS-NLQPREPHISL 403

  Fly   312 ---RAMKNLESAVFIPEKL--------------------------WTQLKRKGASYLVFKVYTRD 347
               .:|.....|..:|..|                          ||.:  .|..|.....|..:
  Rat   404 TGSSSMAEFSVAKVLPPALSAPHYRFPAHGHSYIEIPREALHSQAWTTI--VGLLYHTMHYYLNN 466

  Fly   348 SLFVETE--EEIKRRP-----TSNVISITI--PGLNDTKLPGK--LPFFLRNAKANETQFEGG-- 399
            .....||  |....|.     .|::||:.:  |......|.|.  :...||: |..:.|:...  
  Rat   467 IPPASTEIPEAANCRDCLLSVASHLISLEVSPPPTLSQNLSGSPLITVHLRH-KLTQKQYVDATN 530

  Fly   400 --------CGYWNYETWLSDGISTSGGGSLEASSHPVILCHADHLTQFTFLLGVSKMQAGLDTNE 456
                    |.:.|:.:  .:|:.:|.|.:|...:....:||..|||.|..|:.|..::..|    
  Rat   531 ESNRLFLYCAFLNFSS--GEGVWSSQGCALTEGNLTYSVCHCTHLTNFAILMQVVPLKLTL---- 589

  Fly   457 DDH--SLDVITNVGLTLSLLGLLMIFITAAVFKSFRTLASTK--ILLNLC-AALGLQLLFFLILS 516
             .|  :|..|:.||.:||:|.|....:|.||..|..|:.:.:  |..||. |.|..|:|..:..|
  Rat   590 -GHQVALSSISYVGCSLSVLCLAATLVTFAVLSSVSTIRNQRYHIHANLSFAVLVAQVLLLISFS 653

  Fly   517 QSHLLEQLEQSESERCTLVGAVMQYLLLVVFSWMFIIGFLQYQRYVRVIGVNHPRHYILMSAVAA 581
            .        :..:..|.::..::.|..|..|:||.:.|...|...::|.|....:|  |......
  Rat   654 M--------EPGTVPCQVLAVLLHYFFLTAFAWMLVEGLHLYSMVIKVFGSEDSKH--LYYYGIG 708

  Fly   582 WTLPLIPTLLVVFLEPGSYRPNNSSMDYPILCYPSG-----YGLSLGVILPIGLITVANAILVGY 641
            |..||:..::.|.....||...:|..    |...||     .|.:|.||:...:|.||...::.:
  Rat   709 WGCPLLICIISVSSSMDSYGTGDSCW----LSVESGAIWAFVGPALLVIVVNIVILVAVTRVISH 769

  Fly   642 ISWSVY-----TALFKRDLIFKQLGLFVLLFFLLGITWIFGLCTYFDFGRIFAYLFCLTATLQGF 701
            ||...|     .:.||  |..|.:   .:|..:||.:|:||:....|...:|.|:|.:..:.||.
  Rat   770 ISTDSYKIHGDPSAFK--LTAKAV---AVLLPILGTSWVFGVLAVSDRALVFQYMFAILNSSQGL 829

  Fly   702 VLFLYFIVFN-------KENQRAWLGLCCNSSKKRNQQTIQMPTDSILQGLSHSSTNSTSI 755
            .:||:..:.|       |...:.| .|..:|:...|.:    |:.|.....:...|.||.:
  Rat   830 FIFLFHCLLNSEVRAAFKHKMKVW-SLTSSSAHTANTK----PSSSDTVNGTRPGTASTKL 885

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15556NP_001247379.1 7tm_4 481..703 CDD:304433 61/234 (26%)
Adgrd1XP_001070157.3 LamG <173..273 CDD:304605
GPS 539..579 CDD:280071 12/41 (29%)
7tm_4 595..831 CDD:304433 69/254 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4193
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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