DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15556 and Pdfr

DIOPT Version :9

Sequence 1:NP_001247379.1 Gene:CG15556 / 43681 FlyBaseID:FBgn0039821 Length:755 Species:Drosophila melanogaster
Sequence 2:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster


Alignment Length:573 Identity:121/573 - (21%)
Similarity:197/573 - (34%) Gaps:200/573 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 SGGNMSHFEMLHL---SDNEEDIRAMKN-LESAVFIPEKLWTQLKRKGASYLVFKVYTRDSLFVE 352
            |||.:.|.:.||:   .|.:  :..:.| |:....|..:.:|:|.|:..|       :..|....
  Fly    50 SGGRVRHADSLHIYYAVDGK--MTLLSNILDCGGCISAQRFTRLLRQSGS-------SGPSPSAP 105

  Fly   353 T----EEEIKRRPTSNVISIT--IPGLND-----TKLPG-------------------------- 380
            |    |.:....|||:....|  :|.|:|     |:.||                          
  Fly   106 TAGTFESKSMLEPTSSHSLATGRVPLLHDFDASTTESPGTYVLDGVARVAQLALEPTVMDALPDS 170

  Fly   381 -----------KLPFFLRNAKANETQFEGGCG---------------YWNYETWLSDGISTSG-- 417
                       ..|:.|..|.|..|.|| .|.               .|.::|.|....:.:|  
  Fly   171 DTEQVLGNLNSSAPWNLTLASAAATNFE-NCSALFVNYTLPQTGLYCNWTWDTLLCWPPTPAGVL 234

  Fly   418 ------GG--SLEASSHPVILCHAD--------------------------HLTQFTFLLGVSKM 448
                  ||  .::.....:..|..|                          .:.:....:|....
  Fly   235 ARMNCPGGFHGVDTRKFAIRKCELDGRWGSRPNATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDF 299

  Fly   449 QAGLDTNEDDHSLDVITNVGLTLSLLGLLMIFITAAVFKSFRTLAS--TKILLNLCAALGLQLLF 511
            .|.:|......:|::   |||.|||..|:   ::..:|.:||:|.:  |||..||..|:.||::.
  Fly   300 DAYIDIARRTRTLEI---VGLCLSLFALI---VSLLIFCTFRSLRNNRTKIHKNLFVAMVLQVII 358

  Fly   512 FLILSQSHLLEQLEQSESER---------------CTLVGAVMQYLLLVVFSWMFIIG-FLQYQR 560
            .|.|    .|:|..:...|.               |.....:::|....:|.||||.| :|....
  Fly   359 RLTL----YLDQFRRGNKEAATNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMV 419

  Fly   561 YVRVIGVNHPRHYILMSAVAAWTLPLIPTLL-----VVFLEPG------SYRPNNSSMDYPILCY 614
            .|.|...:.|..:.   :...|.:|::.|.:     |::::..      :|   |.:..|.||  
  Fly   420 TVAVFQGSFPLKFF---SRLGWCVPILMTTVWARCTVMYMDTSLGECLWNY---NLTPYYWIL-- 476

  Fly   615 PSGYGLSLGVILPIGLITVANAI--LVGYISWSVYTALFKRDLIFKQLGLFVLLFFLLGIT---- 673
               .|..|.||| :....:.|.|  ||..:..|..:.:   :...|.:...::|..|||||    
  Fly   477 ---EGPRLAVIL-LNFCFLVNIIRVLVMKLRQSQASDI---EQTRKAVRAAIVLLPLLGITNLLH 534

  Fly   674 -------------WIFGLCTYFDFGRIFAYLFCLTATLQGFVLFLYFIVFNKE 713
                         |.:|  |:|           || :.|||.:.|.:...|.|
  Fly   535 QLAPLKTATNFAVWSYG--THF-----------LT-SFQGFFIALIYCFLNGE 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15556NP_001247379.1 7tm_4 481..703 CDD:304433 64/269 (24%)
PdfrNP_001245501.1 HRM 213..272 CDD:280888 8/58 (14%)
7tm_4 306..563 CDD:304433 72/295 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462184
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.