DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15556 and lat-2

DIOPT Version :9

Sequence 1:NP_001247379.1 Gene:CG15556 / 43681 FlyBaseID:FBgn0039821 Length:755 Species:Drosophila melanogaster
Sequence 2:NP_001040724.1 Gene:lat-2 / 173771 WormBaseID:WBGene00002252 Length:1338 Species:Caenorhabditis elegans


Alignment Length:805 Identity:178/805 - (22%)
Similarity:297/805 - (36%) Gaps:211/805 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 FCKAEDFELEYETDEGKEKRIN-RVEKTRVGQKANLRDLC-LNERGIP--------IRRRCQIRN 121
            :||             |||:.. ..|:||.         | |:|:..|        :.|.|..:.
 Worm   481 YCK-------------KEKKDGITYEQTRA---------CMLHEQPCPDPQNVEGTVTRYCNCQT 523

  Fly   122 GNRVWQSLDHVTC--RSAPELSSSINLLAVKSPP--DMISQLSNLLTQTQEK-LAAADVFSISEI 181
            ..  |::.|...|  |...|:.::|.    .:.|  |:.|.::..|..|.|: |...|:.....:
 Worm   524 AK--WETPDTTNCTHRWVAEMETAIK----DNQPVEDISSTVNRQLKSTIERTLFGGDITGTVRL 582

  Fly   182 FDSLVKKPERNAAVVGDLMKICQKVMSTDNETLRVSADANATNALLSNFEDYLDELSPTIL-KLN 245
            .:.::.......:|:.|             ..||.:...|.|..|..:.:..|..::.|:. :|:
 Worm   583 SNDMLSLARNQFSVLND-------------RNLRENKARNFTENLGGSGDQLLSPVAATVWDQLS 634

  Fly   246 TTIFANSTEFTFHPLFDMGVIVL----KTSELRVFFV---------DPEVRNVSGIVNFSGGNMS 297
            :||...... ....:.:..|::|    ...:|.:.::         :|||:......        
 Worm   635 STIRIQHAS-KLMSVLEQSVLLLGDYMTDQKLNLQYINWAMEVERSEPEVQTFGAAA-------- 690

  Fly   298 HFEMLHLSDNEEDIRAMKNLESA------------VFIPE-KLWTQLKRKGASYL---------- 339
                   |.|.:|...|..:.:|            :..|. ||...:....||.|          
 Worm   691 -------SPNVQDDMGMMRVMAAAPPAPQPETNTTIMFPSLKLSPTITLPSASLLSSLASPTPVA 748

  Fly   340 -----VFKVYTRDS-LFVETEEEIKRRP------------------------TSNVISITIPGLN 374
                 :...:..|: :.:.:...:.|.|                        .|.||..:|....
 Worm   749 GGGPSILSSFQDDTPVGMASTPNLNRNPVKLGYYAFAGFGQLLNNNNDHTLINSQVIGASIQNAT 813

  Fly   375 DT-KLPGKLPF-FLRNAKANETQFEGGCGYWNYETWLSDGISTSGGGSLEASSHPVILCHADHLT 437
            .: .||...|. |.......:......|.||:    |.:...::.|.:|.|:|.....|...|||
 Worm   814 QSVTLPVDHPVTFTFQHLTTKGVSNPRCVYWD----LMESKWSTLGCTLIATSSNSSQCSCTHLT 874

  Fly   438 QFTFLLGVS----KMQAGLDTNEDDHSLDVITNVGLTLSLLGLLMIFITAAVFKSFRTLASTK-- 496
            .|..|:.:|    ::..||.:     :|||::.:|..:|::.|.   ::..||..||.|.:.:  
 Worm   875 SFAILMDISGQVGRLSGGLAS-----ALDVVSTIGCAISIVCLA---LSVCVFTFFRNLQNVRNS 931

  Fly   497 ILLNLCAALGLQLLFFLILSQSHLLEQLEQSESER-CTLVGAVMQYLLLVVFSWMFIIGFLQYQR 560
            |..|||..|.:..|.|:|        .::::.:.. |.:|..::.|..|..|.||.:.|   ||.
 Worm   932 IHRNLCLCLLIAELVFVI--------GMDRTGNRTGCGVVAILLHYFFLSSFCWMLLEG---YQL 985

  Fly   561 YVRVIGVNHP-RHYILMSAVAAWTLPLIPTLLVVFLEPGSYRPNNSSMDYPILCY-----PSGYG 619
            |:.:|.|..| |..|.:..:..:..|.:    ||.:..|....:..:..|   |:     |:.:.
 Worm   986 YMMLIQVFEPNRTRIFLYYLFCYGTPAV----VVAISAGIKWEDYGTDSY---CWIDTSTPTIWA 1043

  Fly   620 LSLGVILPIGLITVANAILVGYISWSVYTALFKRD-----LIFKQLGLFVLLFFLLGITWIFGLC 679
            .    :.||.:|..||.|.: .|:..|..::..||     .|...|.....|..|||||||||..
 Worm  1044 F----VAPIIVIIAANIIFL-LIALKVVLSVQSRDRTKWGRIIGWLKGSATLLCLLGITWIFGFL 1103

  Fly   680 TYF--DFGRIFAYLFCLTATLQGFVLFLYFIVFNKENQRA----WL--GLCC---NSSKKRNQQT 733
            |..  ..|..||::|.:....||..:|:..:|.| |..||    ||  |:||   .||...|.::
 Worm  1104 TAVKGGTGTAFAWIFTILNCTQGIFIFVLHVVLN-EKVRASIVRWLRTGICCLPETSSAAYNSRS 1167

  Fly   734 IQMPTDSIL-----QGLSHSSTNST 753
            .......||     .|.|:.||.||
 Worm  1168 FLSSRQRILNMIKVNGHSYPSTAST 1192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15556NP_001247379.1 7tm_4 481..703 CDD:304433 65/237 (27%)
lat-2NP_001040724.1 CLECT 52..193 CDD:214480
Gal_Lectin 242..322 CDD:280328
CLECT 330..>399 CDD:295302
HormR 479..542 CDD:214468 18/84 (21%)
GAIN 556..>660 CDD:293098 20/117 (17%)
GPS 837..884 CDD:197639 14/50 (28%)
7tm_4 894..1129 CDD:304433 71/265 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S8033
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.860

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