DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha3T and Psmb8

DIOPT Version :10

Sequence 1:NP_651843.1 Gene:Prosalpha3T / 43679 FlyBaseID:FBgn0261395 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_542945.2 Gene:Psmb8 / 24968 RGDID:3426 Length:276 Species:Rattus norvegicus


Alignment Length:243 Identity:57/243 - (23%)
Similarity:94/243 - (38%) Gaps:62/243 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 RLYQVEYAMEAASQSGTCVGLLAKNGVLLATE-RSVDKLMDTSIPVPRISWLNENIACCATGNTA 80
            |..|:|.|     ...|.:....::||::|.: |:.......:|.|.::..:|..:....:|..|
  Rat    63 RKVQIEMA-----HGTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAA 122

  Fly    81 DGNVLVNQLRMIAQQYQFNFGEMI---PCEQLVTNLCDIKQAYTQYGGKRPFGVSF--LYMGWDC 140
            |.......|....:.|....||.|   ...:|::|:      ..||.|   .|:|.  :..||| 
  Rat   123 DCQYWERLLAKECRLYYLRNGERISVSAASKLLSNM------MLQYRG---MGLSMGSMICGWD- 177

  Fly   141 RFGFQLYQSDPSGNYSGWKATCIGRKSGAAMEMLQKELFS-------------KGY---VSPSVE 189
            :.|..||..|.:|.          |.||        ::||             .||   :||  |
  Rat   178 KKGPGLYYVDDNGT----------RLSG--------QMFSTGSGNTYAYGVMDSGYRQDLSP--E 222

  Fly   190 EAKDVAIKVMGMTLGRDSLTPEKLEIAFVQRYG-----NTTVFHILEK 232
            ||.|:|.:.:.....|||.:...:.:..:::.|     :|.|..:|.|
  Rat   223 EAYDLARRAIVYATHRDSYSGGVVNMYHMKKDGWVKVESTDVSDLLHK 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha3TNP_651843.1 Ntn_hydrolase 3..218 CDD:469781 52/222 (23%)
Psmb8NP_542945.2 proteasome_beta_type_5 73..260 CDD:239730 49/216 (23%)

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