DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11318 and lat-1

DIOPT Version :9

Sequence 1:NP_651842.3 Gene:CG11318 / 43678 FlyBaseID:FBgn0039818 Length:802 Species:Drosophila melanogaster
Sequence 2:NP_001366731.1 Gene:lat-1 / 174419 WormBaseID:WBGene00002251 Length:1014 Species:Caenorhabditis elegans


Alignment Length:682 Identity:151/682 - (22%)
Similarity:271/682 - (39%) Gaps:154/682 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 ANWESTEHWDPVVCLRRFREHTISGDLNSLHDDV--LEGRRRTNDTQGRREMTGIMRNMFRQRGG 182
            :||.|:            |...:||.::|  :||  |....|...::.||.|.          ||
 Worm   237 SNWISS------------RNSVLSGVISS--EDVSGLPEFLRNLGSETRRPMV----------GG 277

  Fly   183 NLLPADVHMTGQMFGALMQQDKDATVSVDLVSVCKEIMSCDSKVLRLSAQLNATNSLLSQFESY- 246
            : ||..:|:.            :.||:|    :.:|..:.....|.....:...|.:|...|.: 
 Worm   278 D-LPKVLHLL------------EKTVNV----IAEESWAYQHLPLSNKGAVEVMNYMLRNQEIWG 325

  Fly   247 -MDALPEQLVPKDRCGKVVAKPTSDEAETATT-GVETYNFSDIGVQALITGNISVFFANPECDRI 309
             .|....    |:...:.:.  .:::|..|:. |:.|...|::.||..||..||           
 Worm   326 SWDVTKR----KEFASRFIL--AAEKAMVASAKGMMTSAESNVIVQPAITVEIS----------- 373

  Fly   310 TGLAIFSAPGDQRKTSASGFW----YRFIRFSED-LAKV-KEESNLETAAFLPENLWRQVKSRGA 368
            ..:.:.|.|.|.....::..|    ...:....| :.|: |:|:.:..::|  :||..|:.....
 Worm   374 HKIKMSSQPTDYILFPSAALWNGQNVDNVNIPRDAILKINKDETQVFFSSF--DNLGAQMTPSDV 436

  Fly   369 TYLIFKVYAHDALFVETSLQRTRKPR--SKVISISI----PGLRSNYLSLP--LPFLLRNENLR- 424
            |..|          ..|.....||.|  |:::..|:    ...|...|:.|  :.|..:..::| 
 Worm   437 TVAI----------AGTDQTEVRKRRVVSRIVGASLIENGKERRVENLTQPVRITFYHKESSVRH 491

  Fly   425 --NPDSKAFSIGSGCGYWNYE--TWSTEGVSTESSSDLLKDAIIECHTNHLTQFAFLVGGSYRAN 485
              ||.         |.:||:.  .|...|......:    ..:..|...|||.||.|:  ..|.:
 Worm   492 LSNPT---------CVWWNHHELKWKPSGCKLSYHN----KTMTSCDCTHLTHFAVLM--DVRGH 541

  Fly   486 DLGEEILITPINEKVLDIISIVGCSLSLLGILGIFLTAALFKSWRSQASTKVLLH--LCLAMCLQ 548
            ||.|      |::.:|.:::.|||.:|::.:|..|....:|.   .....:|.:|  |||::.:.
 Worm   542 DLNE------IDQTLLTLLTYVGCIISIICLLLTFFAYLIFS---RNGGDRVFIHENLCLSLAIA 597

  Fly   549 MMLFV--FLNTDDVSEALVVNGNTVRCVALGAAMQYSILVLFSWMLIIAFLQFQRYVTVIGIERP 611
            .:.|:  ...|:|          :::|..:..|:.|..|...:|||:..: ...|.:|.:....|
 Worm   598 EITFLAGITRTED----------SLQCGIIAVALMYMFLSALTWMLLEGY-HIHRMLTEVFPSDP 651

  Fly   612 PRYILKAAIVAWLLPLVPTLLVALIDPDSY-VPSAAQLSTDTGICY----PSGYGLIF---GVVL 668
            .|:..  .:|.::.|.:.||:..|.:.|.: .|....|||.....:    |:.:  ||   .:||
 Worm   652 RRFTY--LLVGYIPPAIITLVAYLYNSDGFGTPDHCWLSTQNNFIWFFAGPACF--IFCANSLVL 712

  Fly   669 PVTLITVCNLVIFVYVFYSISHSLSQSIHKNEKKMVVKQIRLSIMLFFLLGLTWIFGIFAFMQA- 732
            ..||.||.......|:  ...|.:...      :.:...::.|:.|..|||:|||||:|....: 
 Worm   713 VKTLCTVYQHTSGGYL--PCRHDVDSG------RSIRNWVKGSLALASLLGVTWIFGLFWVEDSR 769

  Fly   733 GVAFSYLFCITATMQGFVMFIYFVLLDSTNRR 764
            .:..:|:|.|:.::||..:|::.|:.....|:
 Worm   770 SIVMAYVFTISNSLQGLFIFLFHVVFAEKMRK 801

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11318NP_651842.3 GPS 437..475 CDD:280071 9/39 (23%)
7tm_4 500..750 CDD:304433 64/262 (24%)
lat-1NP_001366731.1 Gal_Lectin 51..133 CDD:396628
HormR 180..244 CDD:214468 3/18 (17%)
GAIN 258..462 CDD:406802 50/259 (19%)
GPS 493..541 CDD:197639 15/62 (24%)
7tmB2_latrophilin-like_invertebrate 548..808 CDD:320556 67/280 (24%)
TM helix 1 551..575 CDD:320556 7/23 (30%)
TM helix 2 584..605 CDD:320556 6/20 (30%)
TM helix 3 615..637 CDD:320556 6/21 (29%)
TM helix 4 655..671 CDD:320556 4/17 (24%)
TM helix 5 690..713 CDD:320556 4/24 (17%)
TM helix 6 744..766 CDD:320556 11/21 (52%)
TM helix 7 771..796 CDD:320556 7/24 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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