Protein Alignment nkx6.1 and lms

DIOPT Version :10

• Sequence 1: NP_001002475.1
• Gene: nkx6.1 / 436748
• ZFINID: ZDB-GENE-040718-178
• Length: 312
• Species: Danio rerio
• Sequence 2: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Alignment Length: 149
• Identity: 49/149 - (32%)
• Similarity: 71/149 - (47%)
• Gaps: 40/149 - (26%)

Zfish   136 AVARYPK--PLTELPGRTPIFWPGVMQSPHWRD--------------ARFACSPHQNSVLLDK-- 182
            ||.|||.  .:.::..:     |.:..|..:.|              |..|.||..:|.|.|.
  Fly     6 AVRRYPHSFSIEQILAK-----PEMRSSTSFEDSVQDESGRGGNCLGASRASSPATSSCLDDNMD 65

Zfish   183 DGK-----------------RKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQV 230
            |||                 :|..|..||..||.|||..||:.|||:..:|..||..|.:||:|:
  Fly    66 DGKSDIDLASDDGNGLGDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQI 130

Zfish   231 KVWFQNRRTKWRKRHAAEM 249
            |:|||||||||::::.:::
  Fly   131 KIWFQNRRTKWKRKYTSDV 149

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nkx6.1	NP_001002475.1	Homeodomain	185..243	CDD:459649	32/74 (43%)
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	20/72 (28%)
		Homeodomain	87..143	CDD:459649	31/55 (56%)