DRSC/TRiP Functional Genomics Resources

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Protein Alignment nkx6.1 and unpg

DIOPT Version :10

Sequence 1:NP_001002475.1 Gene:nkx6.1 / 436748 ZFINID:ZDB-GENE-040718-178 Length:312 Species:Danio rerio
Sequence 2:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster


Alignment Length:268 Identity:66/268 - (24%)
Similarity:104/268 - (38%) Gaps:68/268 - (25%)


- Green bases have known domain annotations that are detailed below.


Zfish    20 PPLAALHSMTEMKTPLYPAYPLSST----GPASS-TSPTATSPNPGGIPVSSPGIKTSSGLSALA 79
            ||....|::.:...|..| :||.:.    .||:: .:||..|.......::...:.:   ||..|
  Fly   133 PPHPPTHALEKQLPPTLP-HPLDTRFLPFNPAAAGVAPTDLSYRRLAELMNQDYVHS---LSVHA 193

Zfish    80 SAQQCAIATPHGINDILSRPSVACSPAGILSGLPRFSSLSPPPPPGLYFSPSAAAVAVARYPK-- 142
            ..|..|.|  ..:::..:.|.:|              .|..|.||..:.||:.:.......|.  
  Fly   194 RLQHMAAA--GRMHEDQANPGMA--------------QLQEPTPPQAHSSPAKSGSHSPMEPALD 242

Zfish   143 -----------------PLTELPGRTPIFWPGVM-----------QSPHWRDARFACSPHQNSVL 179
                             .||    .:|..:.|.|           .|....|...|.|.|:...:
  Fly   243 VGMDEDFECSGDSCSDISLT----MSPRNYNGEMDKSRNGAYTNSDSEDCSDDEGAQSRHEGGGM 303

Zfish   180 LDKD---------GKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQ 235
            ..||         .|.:..|..|:.:|:..||:.|...|||:..||:::|.||.::|.|||:|||
  Fly   304 GGKDSQGNGSSSNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQ 368

Zfish   236 NRRTKWRK 243
            |||.||::
  Fly   369 NRRAKWKR 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nkx6.1NP_001002475.1 Homeodomain 185..243 CDD:459649 27/57 (47%)
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 25/51 (49%)

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