DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chchd3 and AT4G12340

DIOPT Version :10

Sequence 1:NP_651838.1 Gene:Chchd3 / 43672 FlyBaseID:FBgn0010808 Length:223 Species:Drosophila melanogaster
Sequence 2:NP_567389.1 Gene:AT4G12340 / 826843 AraportID:AT4G12340 Length:170 Species:Arabidopsis thaliana


Alignment Length:202 Identity:47/202 - (23%)
Similarity:72/202 - (35%) Gaps:57/202 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 IDISDDVVKRLKAGISQQAREHAAAAEESKPVPKPTTKAAA--------KPAASSPAASPAPKVS 81
            |.||..::.:|..|..|..|.    |:::||...|.:|...        .|.|..|...      
plant     6 IQISSKLINQLAEGNDQPKRR----AKKTKPKVSPQSKQKTNQDEEKKPNPVAELPMQP------ 60

  Fly    82 SYPAAVPIYVQGGGHTISAADVQRQMNQELIKNDELWKERMAKLEENL-----KKTNTILEKEYA 141
              |...||..||      ||..:.:..:.::|..|...|::...|:|:     ::...:.|||: 
plant    61 --PFFFPIPPQG------AASTELESIKSVVKESEKVLEKLELQEKNIVREVTERAKDLREKEF- 116

  Fly   142 NAVENVHKRFVSTASSHKVP-----PCQDLKSQLLACYRAHPGETLKCIEEVAQFRQCIDLHRVQ 201
                             |:|     ||.......:.||:.:.|..|||...|..|:.|....|.|
plant   117 -----------------KIPEPKPMPCSSDHEAWMKCYKENIGSPLKCSGFVKSFQDCARRSRQQ 164

  Fly   202 KLDAEPE 208
               ..||
plant   165 ---VNPE 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chchd3NP_651838.1 DUF1690 <103..193 CDD:429752 20/99 (20%)
CHCH 163..195 CDD:429096 9/31 (29%)
AT4G12340NP_567389.1 None

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