DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chchd3 and Chchd6

DIOPT Version :10

Sequence 1:NP_651838.1 Gene:Chchd3 / 43672 FlyBaseID:FBgn0010808 Length:223 Species:Drosophila melanogaster
Sequence 2:NP_001100078.1 Gene:Chchd6 / 297436 RGDID:1304561 Length:261 Species:Rattus norvegicus


Alignment Length:266 Identity:64/266 - (24%)
Similarity:93/266 - (34%) Gaps:74/266 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGARQSQSREPRTVSMENPTPAGV-----IDISDDVVKRLKAGISQQAREHAAAAEESK-PVPKP 59
            ||:  |:|.|.|.||.|......|     |.:|:.||.|:|......|.|..|.....: .||.|
  Rat     1 MGS--SESAEARRVSFEMDEEERVRVLQGIRLSESVVNRMKDCSQPSAGEQLAPGPGPECSVPVP 63

  Fly    60 TTKAAAKPAASSPAASP-APKVSSYPAAVPIYVQG----------GGHTISAA--DVQRQMNQEL 111
            |......|..:.|:.|. .|...:|.|.     ||          .|...||.  |:::...::|
  Rat    64 TVPQPTIPVLTVPSPSVCGPAEGTYKAP-----QGDFKVSRAENSDGQQSSAVKEDLKKFQQEQL 123

  Fly   112 IKNDEL-------------------------------------WKERMAKL----------EENL 129
            ...|||                                     .|.|.|:|          :|.:
  Rat   124 AVQDELVKVARKEKEATEKHLKASLPKKKATHEQQQSDRLTRELKNREAELSRRDTFYKEQQERI 188

  Fly   130 KKTNTILEKEYANAVENVHKRFVSTASSHKVPP-CQDLKSQLLACYRAHPGETLKCIEEVAQFRQ 193
            ::.|..|.|..:........:..||....:|.| |..|::|:|.|||.|..|.|.|.:....::.
  Rat   189 QEKNAELYKLSSQQFHEAASKAESTIKPRRVEPVCSGLQAQILRCYRDHLHEVLLCSDLAKAYQH 253

  Fly   194 CIDLHR 199
            |:...|
  Rat   254 CVSTAR 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chchd3NP_651838.1 DUF1690 <103..193 CDD:429752 27/137 (20%)
CHCH 163..195 CDD:429096 11/31 (35%)
Chchd6NP_001100078.1 MIC19_MIC25 31..214 CDD:461615 37/187 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..59 4/19 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..114 8/37 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 140..165 0/24 (0%)
CHCH 223..256 CDD:429096 12/32 (38%)
Cx9C motif 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU01150 223..233 4/9 (44%)
Cx9C motif 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU01150 244..254 1/9 (11%)

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