DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CanA1 and gsp-3

DIOPT Version :10

Sequence 1:NP_524600.3 Gene:CanA1 / 43670 FlyBaseID:FBgn0010015 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_491429.1 Gene:gsp-3 / 172082 WormBaseID:WBGene00021113 Length:305 Species:Caenorhabditis elegans


Alignment Length:272 Identity:99/272 - (36%)
Similarity:149/272 - (54%) Gaps:21/272 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 AVALRIITEGAALLREEKNMIDVEAPITVCGDIHGQFFDLVKLFEVGGPPATTRYLFLGDYVDRG 163
            |||..:....|:||       :||.||.||||||||:.||:::|:..|.|....:||||||||||
 Worm    38 AVAKSVFASQASLL-------EVEPPIIVCGDIHGQYSDLLRIFDKNGFPPDVNFLFLGDYVDRG 95

  Fly   164 YFSIECVLYLWSLKITYPTTLSLLRGNHECRHLTEYFTFKQECIIKY-SESIYDACMEAFDCLPL 227
            ..:||.:..:...||.||....:|||||||..:...:.|.:||..:| |..::....:.|:.:||
 Worm    96 RQNIETICLMLCFKIKYPENFFMLRGNHECPAINRVYGFYEECNRRYKSTRLWSIFQDTFNWMPL 160

  Fly   228 AALLNQQFLCIHGGLSPEIFTLDDIKTLNRFREPPAYGPMCDLLWSDPLEDFGNEKTNEFFSHNS 292
            ..|:..:.||:||||||.:.|||.::.|.|.::||......||||:||.:.....:.|       
 Worm   161 CGLIGSRILCMHGGLSPHLQTLDQLRQLPRPQDPPNPSIGIDLLWADPDQWVKGWQAN------- 218

  Fly   293 VRGCSYFFSYSACCEFLQKNNLLSIVRAHEAQDAGYRMYRKNQVTGFPSLITIFSAPNYLDVYNN 357
            .||.||.|......:...:.::..:.|||:....||..:...:      ::||||||:|...::|
 Worm   219 TRGVSYVFGQDVVADVCSRLDIDLVARAHQVVQDGYEFFASKK------MVTIFSAPHYCGQFDN 277

  Fly   358 KAAVLKYENNVM 369
            .||.:|.:.|::
 Worm   278 SAATMKVDENMV 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CanA1NP_524600.3 MPP_PP2B 81..385 CDD:277361 99/272 (36%)
gsp-3NP_491429.1 MPP_superfamily 6..297 CDD:472684 99/272 (36%)

Return to query results.
Submit another query.