DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT7 and Htr4

DIOPT Version :9

Sequence 1:NP_001263131.1 Gene:5-HT7 / 43669 FlyBaseID:FBgn0004573 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_036985.2 Gene:Htr4 / 25324 RGDID:2850 Length:388 Species:Rattus norvegicus


Alignment Length:397 Identity:130/397 - (32%)
Similarity:182/397 - (45%) Gaps:95/397 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 IVLL----IVILGTVVGNVLVCIAVCMVRKLRR-PCNYLLVSLALSDLCVALLVMPMALLYEVLE 226
            :|||    :|||..::||:||.:|||..|:||: ..||.:||||.:||.|::||||...:..|.:
  Rat    20 VVLLTFFAMVILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQD 84

  Fly   227 KWNFGPLLCDIWVSFDVLCCTASILNLCAISVDRYLAI-TKPLEYGVKRTPRRMMLCVGIVWLAA 290
            .|.:|.:.|.:..|.|||..||||.:||.||:|||.|| .:||.|..|.||.|:.|.:|..|:..
  Rat    85 IWFYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVIP 149

  Fly   291 ACISLPPLL-----------ILGNEHEDEEGQPICTVCQNFAYQIYATLGSFYIPLSVMLFVYYQ 344
            ..||..|::           |...:.........|....|..|.|..::.:||||..:|:..||:
  Rat   150 MFISFLPIMQGWNNIGIVDVIEKRKFNHNSNSTFCVFMVNKPYAITCSVVAFYIPFLLMVLAYYR 214

  Fly   345 IFRAARRIVLEEKRAQTHLQQALNGTGSPSAPQAPPLGHTELASSGNGQRHSSVGNTSLTYSTCG 409
            |:..|:    |..:....||:|  |..|.|.||             ...:||:            
  Rat   215 IYVTAK----EHAQQIQMLQRA--GATSESRPQ-------------TADQHST------------ 248

  Fly   410 GLSSGGGALAGHGSGGGVSGSTGLLGSPHHKKLRFQLAKEKKASTTLGIIMSAFTVCWLPFFILA 474
                                         |:     :..|.||:.||.:||..|..||.|||:..
  Rat   249 -----------------------------HR-----MRTETKAAKTLCVIMGCFCFCWAPFFVTN 279

  Fly   475 LIRPFETMHVPASLSSLFLWLGYANSLLNPIIYATLNRDFRKPFQEILYFRCSSLNTMMRENYYQ 539
            ::.||....||..:.:.||||||.||.|||.:||.||:.||:.|..||   |..          .
  Rat   280 IVDPFIDYTVPEKVWTAFLWLGYINSGLNPFLYAFLNKSFRRAFLIIL---CCD----------D 331

  Fly   540 DQYGEPP 546
            ::|..||
  Rat   332 ERYKRPP 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT7NP_001263131.1 7tm_4 173..>342 CDD:304433 69/181 (38%)
7tm_1 179..507 CDD:278431 111/340 (33%)
Htr4NP_036985.2 7tmA_5-HT4 20..323 CDD:320184 123/367 (34%)
TM helix 1 22..46 CDD:320184 11/23 (48%)
TM helix 2 56..78 CDD:320184 13/21 (62%)
TM helix 3 94..116 CDD:320184 11/21 (52%)
TM helix 4 140..156 CDD:320184 5/15 (33%)
TM helix 5 190..213 CDD:320184 7/22 (32%)
TM helix 6 258..280 CDD:320184 10/21 (48%)
TM helix 7 291..316 CDD:320184 13/24 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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