DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT7 and octr-1

DIOPT Version :9

Sequence 1:NP_001263131.1 Gene:5-HT7 / 43669 FlyBaseID:FBgn0004573 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001024569.1 Gene:octr-1 / 184469 WormBaseID:WBGene00006411 Length:408 Species:Caenorhabditis elegans


Alignment Length:424 Identity:146/424 - (34%)
Similarity:221/424 - (52%) Gaps:48/424 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 NLGDSNTTLVPLSDTPLLLEEFAAGEFVLPPLTSIFVSIVLLIVILGTVVGNVLVCIAVCMVRKL 193
            |..:|:|.:..|:          .||.||  ..|..::::|||:.     ||:||.:.|...|||
 Worm     5 NCSESDTKVACLN----------LGEAVL--TISSMLTVMLLIIF-----GNLLVVVTVYRDRKL 52

  Fly   194 R-RPCNYLLVSLALSDLCVALLVMPMALLYEVLEKWNFGPLLCDIWVSFDVLCCTASILNLCAIS 257
            | :..|:|:||||::|:.|.|||||:.|.||::.:|..|.:||:||::.|||..|||||::||||
 Worm    53 RMQRQNWLIVSLAVADMLVGLLVMPLTLTYEIVGEWTMGNILCEIWLALDVLFVTASILHICAIS 117

  Fly   258 VDRYLAITKPLEYGVKRTPRRMMLCVGIVWLAAACISLPPLLILGNEHEDEEGQPICTVCQNFAY 322
            :|||.::|.||.|...|||.||.:.:|:.|:.:..|.|||  |.|...|..||:  |:|..:..|
 Worm   118 LDRYFSVTSPLTYPATRTPLRMFIYIGVSWIVSLLICLPP--IFGWRPERAEGE--CSVSTDLGY 178

  Fly   323 QIYATLGSFYIPLSVMLFVYYQIF----RAARRIVLEEKRAQTHLQQALNGTGSPSAPQAPPLGH 383
            .:|::|||||||:.:::.||.:|:    |.:|:.:.|.:| :.|....|....|.:.........
 Worm   179 VLYSSLGSFYIPVVILIIVYAKIYSITIRHSRQRLKETER-RDHTLNMLTIRSSTNERYNMEYEL 242

  Fly   384 TELASSGNGQRHSSVGNTSLTYSTCGGLSSGGGALAGHGSGGGVSGSTGLLGSPH---------- 438
            .|.:.....::...|.|..:....|..|......|...|....::..|.....|.          
 Worm   243 EENSDPIEDEKEKVVTNRDMINKVCWQLRKISEELPRQGVKVSIALDTNHNSPPASDLTRKLEEK 307

  Fly   439 ---HKKLRFQLAKEKKASTTLGIIMSAFTVCWLPFFILALIRPFETMHVPASLSSLFLWLGYANS 500
               .|:.|...|||::|:..||||:|||.:.|||||::.:|..| ....|..:...|.||||.||
 Worm   308 KFCEKRKRKLKAKERQATLLLGIILSAFILSWLPFFLIYVIGAF-GHEAPPLVFKFFFWLGYCNS 371

  Fly   501 LLNPIIYATLNRDFRKPFQEILYFRCSSLNTMMR 534
            .:||:||...||:|::..       |..|:...|
 Worm   372 GINPVIYTVFNREFKRGL-------CKQLHKFER 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT7NP_001263131.1 7tm_4 173..>342 CDD:304433 77/169 (46%)
7tm_1 179..507 CDD:278431 126/345 (37%)
octr-1NP_001024569.1 7tmA_alpha2_AR 22..389 CDD:320187 137/379 (36%)
TM helix 1 24..48 CDD:320187 9/28 (32%)
TM helix 2 58..80 CDD:320187 13/21 (62%)
TM helix 3 96..118 CDD:320187 13/21 (62%)
TM helix 4 141..157 CDD:320187 4/15 (27%)
TM helix 5 176..199 CDD:320187 10/22 (45%)
TM helix 6 322..347 CDD:320187 13/24 (54%)
TM helix 7 357..382 CDD:320187 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3253
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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