DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT7 and dop-4

DIOPT Version :10

Sequence 1:NP_524599.1 Gene:5-HT7 / 43669 FlyBaseID:FBgn0004573 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_508238.2 Gene:dop-4 / 183715 WormBaseID:WBGene00016872 Length:517 Species:Caenorhabditis elegans


Alignment Length:525 Identity:151/525 - (28%)
Similarity:236/525 - (44%) Gaps:115/525 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 SYGLASMNSSPIAIVSYQGITSSNLGDSNTTLVPLSDTPLLLEEFAAGEFVLPPLTSIFVSIVLL 170
            :||     |.|.|...|..:|.|...:::||:       ...||.||..:..|.|.....||.||
 Worm     3 AYG-----SDPNAEDLYITMTPSVSTENDTTV-------WATEEPAAIVWRHPLLAIALFSICLL 55

  Fly   171 IVILGTVVGNVLVCIAVCMVRKLRRPCNYLLVSLALSDLCVALLVMPMALLYEVL-EKWNFGPLL 234
                 ||.||.||.||||..:.||.|..||::|||::||.|.::||||..|:|:. ..|.||.::
 Worm    56 -----TVAGNCLVVIAVCTKKYLRNPTGYLIISLAIADLIVGVIVMPMNSLFEIANHTWLFGLMM 115

  Fly   235 CDIWVSFDVLCCTASILNLCAISVDRYLAITKPLEYGVKRTPRRMMLCVGIVWLAAACISLPPLL 299
            ||::.:.|:|..||||.|||.||:|||:|...|:.|..|.:.||:::.:..||:.:|.:|.|.::
 Worm   116 CDVFHAMDILASTASIWNLCVISLDRYMAGQDPIGYRDKVSKRRILMAILSVWVLSAILSFPGII 180

  Fly   300 --ILGNEHEDEEGQPICTVCQNFAYQIYATLGSFYIPLSVMLFVYYQIFRAARR----------- 351
              ...:.|..|: |..|....:..|..:::|.||||||.::||.|.:::..|.|           
 Worm   181 WWRTSSPHLYED-QSQCLFTDSKMYVSFSSLVSFYIPLFLILFAYGKVYIIATRHSKGMRMGIKT 244

  Fly   352 IVLEE---KRAQTHLQQALNGTGSPSAPQAPPLGHTELASSGNGQRHSSVGNTSLTYS-TCGGLS 412
            :.:::   |::.|..:..|:....|:.......|....:|..|.:.|:......|... :|..|:
 Worm   245 VSIKKRNGKKSNTETESILSSENEPTLRIHFGRGKQSSSSLRNSRFHARESTRLLLKQVSCKSLN 309

  Fly   413 SGG--------------GALAGHGS-----------GGGV----------------------SGS 430
            ..|              |....|..           |..|                      |.|
 Worm   310 DRGEHNNNNTVRQPLLRGTEGCHSDSISRSSQRNFRGRNVTIGSNCSSTLLQVDQPDRMSLSSNS 374

  Fly   431 TGLLGSP--HHKKLR--------FQLAKEKKASTTLGIIMSAFTVCWLPFFILALIRPF------ 479
            ..::.||  ..:||.        .:...|::|:.||.|::.||.:||.|||:...:..|      
 Worm   375 QMVMTSPLSTRRKLNVREKSRQMMRYVHEQRAARTLSIVVGAFILCWTPFFVFTPLTAFCESCFS 439

  Fly   480 --ETMHVPASLSSLFLWLGYANSLLNPIIYATLNRDFRKPFQEILYFRCSSLNTMMRENYYQDQY 542
              ||      :.:...|.|:.||:|||:||:..:||||:.|::||        |..|:...:..:
 Worm   440 NKET------IFTFVTWAGHLNSMLNPLIYSRFSRDFRRAFKQIL--------TCQRQQKVKTAF 490

  Fly   543 GEPPS 547
            ..|.|
 Worm   491 KTPLS 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT7NP_524599.1 7tmA_5-HT7 163..518 CDD:320452 128/437 (29%)
TM helix 1 164..190 CDD:320452 14/25 (56%)
TM helix 2 197..223 CDD:320452 13/25 (52%)
TM helix 3 235..265 CDD:320452 17/29 (59%)
TM helix 4 277..299 CDD:320452 7/21 (33%)
TM helix 5 319..348 CDD:320452 11/28 (39%)
TM helix 6 447..477 CDD:320452 12/29 (41%)
TM helix 7 486..511 CDD:320452 9/24 (38%)
dop-4NP_508238.2 7tmA_Dop1R2-like 44..474 CDD:320195 129/441 (29%)
TM helix 1 44..70 CDD:320195 15/30 (50%)
TM helix 2 77..103 CDD:320195 13/25 (52%)
TM helix 3 116..146 CDD:320195 17/29 (59%)
TM helix 4 158..180 CDD:320195 7/21 (33%)
TM helix 5 201..230 CDD:320195 11/28 (39%)
TM helix 6 401..431 CDD:320195 12/29 (41%)
TM helix 7 442..467 CDD:320195 11/30 (37%)

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