DRSC/TRiP Functional Genomics Resources

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Protein Alignment 5-HT7 and ser-7

DIOPT Version :9

Sequence 1:NP_001263131.1 Gene:5-HT7 / 43669 FlyBaseID:FBgn0004573 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_741730.1 Gene:ser-7 / 180565 WormBaseID:WBGene00004780 Length:435 Species:Caenorhabditis elegans


Alignment Length:450 Identity:174/450 - (38%)
Similarity:247/450 - (54%) Gaps:37/450 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 SMNSSPIAIVSYQGITSSNLGDSNTTLVPLSDTPLLLEEFAAGEFVLPPLTSIFVSIVLLIVILG 175
            ::|.||.|..:...|||:...|.      |....:.|..|..|:.:|        :|.:|.:|:.
 Worm     4 AVNISPFASYTVVPITSAWPPDD------LKADRVQLASFTTGKALL--------AIAILAMIIM 54

  Fly   176 TVVGNVLVCIAVCMVRKLRRPCNYLLVSLALSDLCVALLVMPMALLYEVLEKWNFGPLLCDIWVS 240
            |.|||.|||:||.:||||:.|.|:||||||::|..|.|:|||:||:..:.:||..|..:|.::.:
 Worm    55 TTVGNALVCLAVLLVRKLKHPQNFLLVSLAVADFFVGLVVMPLALIDLLFDKWPLGSTMCSVYTT 119

  Fly   241 FDVLCCTASILNLCAISVDRYLAITKPLEYGVKRTPRRMMLCVGIVWLAAACISLPPLLI--LGN 303
            .|:..|||||:|||||||||||.|:.||.|..|||.:|:|:.:..||:.||.:|:...:|  |.|
 Worm   120 SDLTLCTASIVNLCAISVDRYLVISSPLRYSAKRTTKRIMMYIACVWIIAAIVSISSHIIANLLN 184

  Fly   304 E--HEDEEGQPICTVCQNFAYQIYATLGSFYIPLSVMLFVYYQIFRAARRIVLEEKRAQTHLQQA 366
            :  :.|:.|  .|.|..:|.||.|||:.|||.|..:|:.:..:|:|||:|:..:: |..:|    
 Worm   185 DGTYVDDTG--TCQVIPHFIYQSYATIISFYAPTFIMVILNIKIWRAAKRLAAQD-RLMSH---- 242

  Fly   367 LNGTGSPSAPQAPPLGHTELASSGNGQRHSSVGNTSLTYSTCGGLSSGGGALAGHGSGGGVSGST 431
               ..|..|.:.|..|..|.....|.:....|.......||...|........ |......|.:.
 Worm   243 ---CNSVDASERPRNGSAETKDFLNEKETIDVPKKERANSTNSRLFKLERKYL-HRPSAFFSAAK 303

  Fly   432 GLLGSPHHKKLRFQLAKEKKASTTLGIIMSAFTVCWLPFFILALIRPFETMHVPASLSSLFLWLG 496
            |.|       :|.....|.||..|||:|||.|.:|||||||||:.:.| .|.:|..|..|.||||
 Worm   304 GPL-------IRQTEKSECKARKTLGVIMSVFIICWLPFFILAIFKSF-GMWIPDWLDLLALWLG 360

  Fly   497 YANSLLNPIIYATLNRDFRKPFQEILYFRCSSLNTMMRENYYQDQYGEPPSQRVMLGDER 556
            |:||.|||:||...|::||.||:|:|..||::|.|:||:..:..:||.|...|......|
 Worm   361 YSNSTLNPLIYCKYNKEFRIPFREMLACRCATLQTVMRQQSFTSRYGPPVRYRTQSSSYR 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT7NP_001263131.1 7tm_4 173..>342 CDD:304433 83/172 (48%)
7tm_1 179..507 CDD:278431 136/331 (41%)
ser-7NP_741730.1 7tmA_5-HT7 42..382 CDD:320452 147/366 (40%)
TM helix 1 44..68 CDD:320452 13/31 (42%)
TM helix 2 77..99 CDD:320452 13/21 (62%)
TM helix 3 115..137 CDD:320452 11/21 (52%)
TM helix 4 160..176 CDD:320452 5/15 (33%)
TM helix 5 201..224 CDD:320452 11/22 (50%)
TM helix 6 315..340 CDD:320452 17/24 (71%)
TM helix 7 350..375 CDD:320452 14/24 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 225 1.000 Domainoid score I1441
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20244
Inparanoid 1 1.050 274 1.000 Inparanoid score I1803
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1327781at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto19252
orthoMCL 1 0.900 - - OOG6_106732
Panther 1 1.100 - - LDO PTHR24247
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3253
SonicParanoid 1 1.000 - - X1464
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.000

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