DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ctr1C and slc31a1

DIOPT Version :9

Sequence 1:NP_651837.1 Gene:Ctr1C / 43668 FlyBaseID:FBgn0062411 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_001307334.1 Gene:slc31a1 / 403028 ZFINID:ZDB-GENE-040415-3 Length:188 Species:Danio rerio


Alignment Length:263 Identity:78/263 - (29%)
Similarity:108/263 - (41%) Gaps:83/263 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 HVHHHASHGSPEPVPPSSGHEGHHSPEMNHHGNHGEHTKHGHHEGGAHDMSMAMFFHTG-DSETI 75
            |.|||... :..|.|.|..|.||.:...|.||:              |.|.|.|.|:.| .:..:
Zfish     5 HSHHHVEE-TTMPSPASDDHGGHLTTSGNGHGD--------------HMMMMQMTFYFGYKNVEL 54

  Fly    76 LFKFWRTESAMALTLSCLLIFMVAVLYEALKFFREWLFSWDRKRLAGGRDQYNRPRRYREANYNY 140
            ||......:...:..:|:.:|::|||||.||..||.|.                  |..:.|..|
Zfish    55 LFAGLVINTPGEMAGACIGVFLLAVLYEGLKIGREVLL------------------RRNQVNVRY 101

  Fly   141 NQPTYPPRTNQQSGTQVYAYRPRSPSMPPLQPPGRSSPQAQSSLILTQHTHHHVQENTPPAGRTT 205
            |                        |||   .||       |...:...||..|.:.        
Zfish   102 N------------------------SMP---VPG-------SDGTVLMETHKTVGQR-------- 124

  Fly   206 KLKVFCSGMHILQTFLHVLQVLISFLLMLVFMTFNVWLCVAVLLGAGVGYYIFC---AFRTNVQE 267
                ..|..|.|||.||::||::|:.|||||||:|.:||:||..|||:||::|.   |...::.|
Zfish   125 ----MLSMAHFLQTLLHIIQVVVSYFLMLVFMTYNGYLCIAVAAGAGLGYFLFSWKKAVVVDITE 185

  Fly   268 HCN 270
            ||:
Zfish   186 HCH 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ctr1CNP_651837.1 SelP_N <23..56 CDD:282453 9/32 (28%)
Ctr 63..258 CDD:282057 58/195 (30%)
slc31a1NP_001307334.1 Ctr 41..173 CDD:282057 58/195 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 100 1.000 Domainoid score I6967
eggNOG 1 0.900 - - E1_KOG3386
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1389393at2759
OrthoFinder 1 1.000 - - FOG0000938
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12483
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4018
SonicParanoid 1 1.000 - - X3487
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.910

Return to query results.
Submit another query.