DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snrka and par-1

DIOPT Version :9

Sequence 1:NP_001180256.1 Gene:snrka / 436661 ZFINID:ZDB-GENE-040718-84 Length:804 Species:Danio rerio
Sequence 2:NP_995894.2 Gene:par-1 / 2768852 FlyBaseID:FBgn0260934 Length:1170 Species:Drosophila melanogaster


Alignment Length:624 Identity:193/624 - (30%)
Similarity:305/624 - (48%) Gaps:94/624 - (15%)


- Green bases have known domain annotations that are detailed below.


Zfish    14 GLYDLDKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTVATGHLFQEVRCMKLVQHPNIVRL 78
            |.|.|.||:|:|:||.||||:|:.||::||:|:||||:|:..:...||:|||.||::.|||||:|
  Fly   251 GKYKLIKTIGKGNFAKVKLAKHLPTGKEVAIKIIDKTQLNPGSLQKLFREVRIMKMLDHPNIVKL 315

Zfish    79 YEVIDTQTKLYLILELGDGGDMFDYIMKHEEGLNEELAKKYFAQIVHAISYCHRLHVVHRDLKPE 143
            ::||:|:..||||:|...||::|||::.|.. :.|:.|:..|.|||.|:.|||:..::|||||.|
  Fly   316 FQVIETEKTLYLIMEYASGGEVFDYLVLHGR-MKEKEARVKFRQIVSAVQYCHQKRIIHRDLKAE 379

Zfish   144 NVVFFEKQGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDEYDAPAVDIWSLGVILFML 208
            |:: .:.:..:|:.||||||:|.||.||.|.|||..|:|||:..|.:||.|.||:|||||||:.|
  Fly   380 NLL-LDSELNIKIADFGFSNEFTPGSKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTL 443

Zfish   209 VCGQPPFQEANDSETLTMIMDCKYTVPAHVSNACKDLINRMLQRDPKRRASLEEIESHAWL-QGV 272
            |.|..||..:...|....::..||.:|.::|..|::|:.:.|..:|.:|||||.|....|: .|.
  Fly   444 VSGSLPFDGSTLRELRERVLRGKYRIPFYMSTDCENLLRKFLVLNPAKRASLETIMGDKWMNMGF 508

Zfish   273 DPSPATKYNTPLVSHKNLSEEEHNSIIQRMV-LGDIADREAIVEALETNKYNHITATYFLLAERI 336
            :......|..|   ..:|::.:.   |:.:| :|  .:|..|..:|...:|:.:.|||.||..:.
  Fly   509 EEDELKPYIEP---KADLADPKR---IEALVAMG--YNRSEIEASLSQVRYDDVFATYLLLGRKS 565

Zfish   337 LREKQEKEVQPRSSSPSNIKAQFR---------QSWPTKNDLHQDIEDS------LASSSI--CH 384
            ...:.:......|.|..||.....         || ||...:|:.|..|      .|||.:  .:
  Fly   566 TDPESDGSRSGSSLSLRNISGNDAGANAGSASVQS-PTHRGVHRSISASSTKPSRRASSGVGPTN 629

Zfish   385 AGGPQSPARSAENLLNGHRNKGLLEVSRREEICEASSSSPAPASLPPNPLKPGVMAPLASASAKQ 449
            |....:.|..|...:|...|            ..|:.|:...||:..|..:...   :.||:.|:
  Fly   630 AAATVAAATGAVGAVNPSNN------------YNAAGSAADRASVGSNFKRQNT---IDSATIKE 679

Zfish   450 RTCLFRVEEDEEEEEEQE---------PSPLPTQVVLRRKP------LSITNRLTSRKSAPVLNQ 499
            .|.....:........|:         .||...:...:..|      :|.|:.:..|:|    ..
  Fly   680 NTARLAAQNQRPASATQKMLTTADTTLNSPAKPRTATKYDPTNGNRTVSGTSGIIPRRS----TT 740

Zfish   500 IFEEEGESDDDFDMDESLPPKLSRL--KMNMTSPGTAQKRYPRRKSQGRGSSCSSSETSDDDSES 562
            ::|:...::     ..::.|..:.|  ::.|.|...:.:.:||            :..|.....|
  Fly   741 LYEKTSSTE-----KTNVIPAETNLFDRLRMASAVKSSRHFPR------------NVPSRSTFHS 788

Zfish   563 HRRRLDKDTGFTYSWNRRDSSEGPPGNSGGNGGGSSGGQ 601
            .:.|...:|...||           |.||.:|..|..|:
  Fly   789 GQTRARNNTALEYS-----------GTSGASGDSSHPGR 816

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snrkaNP_001180256.1 STKc_SNRK 12..269 CDD:270976 121/254 (48%)
S_TKc 16..269 CDD:214567 120/252 (48%)
UBA_SNRK 288..335 CDD:270524 13/47 (28%)
par-1NP_995894.2 STKc_MARK 252..504 CDD:270974 120/253 (47%)
S_TKc 253..504 CDD:214567 120/252 (48%)
UBA_MARK_Par1 525..563 CDD:270522 12/42 (29%)
MARK1-3_C 839..936 CDD:213381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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