DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptx1 and Pax8

DIOPT Version :10

Sequence 1:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster
Sequence 2:NP_112403.2 Gene:Pax8 / 81819 RGDID:620434 Length:457 Species:Rattus norvegicus


Alignment Length:447 Identity:87/447 - (19%)
Similarity:135/447 - (30%) Gaps:175/447 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 PAISSL-------------MPISSLSHLHHSAGQDLVGGYSQHPHHTVVPPHTPKHEPLEKLRIW 179
            |::||:             :|:.|.     .|.:.|..|::..|...|.||.:|:          
  Rat   123 PSVSSINRIIRTKVQQPFNLPMDSC-----VATKSLSPGHTLIPSSAVTPPESPQ---------- 172

  Fly   180 AETGDFRDSHSSMTAVANSLDSTHLNNFQTSSTSSISNRSRDRKDGNRSVNETTIKTENISSSGH 244
                            ::||.||:..|.........|:..|...|.::.....:|.::: |||| 
  Rat   173 ----------------SDSLGSTYSINGLLGIAQPGSDNKRKMDDSDQDSCRLSIDSQS-SSSG- 219

  Fly   245 DEPMTTSGEEPKNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMWTNLTEARVR 309
                             .|:..:...|....|:.||..|.|..||:                   
  Rat   220 -----------------PRKHLRTDTFGQHHLEPLECPFERQHYPE------------------- 248

  Fly   310 VWFKNRRAKWRKRERNAMNAAVAAADFKSGFGTQFMQPFADDSLYSSYPYNNWTKVPSPLGTKPF 374
                                |.|:.....|          :..||           |.||     
  Rat   249 --------------------AYASPSHTKG----------EQGLY-----------PLPL----- 267

  Fly   375 PWPVNPLGSMVAGNHHQNSVNCFNTGASGVAVSMNNASMLPGS--MGSSLSNTSNVGAVGAP-CP 436
                            .||           .:....|::.|.:  :|.:||.......|..| .|
  Rat   268 ----------------LNS-----------TLDDGKATLTPSNTPLGRNLSTHQTYPVVADPHSP 305

  Fly   437 YT-TPANPYMYRSAAEPCMSSSMSSSIATLRLKAKQHASAGFGSPYSAPSPVSRSNSAGLSAC-Q 499
            |. ....|.:..|::.|   ||:||| |.|.|:     ..|.|.|..|..|...:.|...|.. |
  Rat   306 YAIKQETPELSSSSSTP---SSLSSS-AFLDLQ-----QVGSGGPAGASVPPFNAFSHAASVYGQ 361

  Fly   500 YTGVGVTDVVXENALGALLNQHQHHLQHFSGGSVGGSGVPNGM---QQHSGNMLHHS 553
            :||..:  :. ...:|..|..:..|:.....||...|.:. ||   .::|||...|:
  Rat   362 FTGQAL--LSGREMVGPTLPGYPPHIPTSGQGSYASSAIA-GMVAGSEYSGNAYSHT 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptx1NP_001138130.2 Homeodomain 265..321 CDD:459649 8/55 (15%)
Pax8NP_112403.2 PAX 9..133 CDD:128645 3/9 (33%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 12..68
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 87..135 3/11 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..226 19/111 (17%)
Pax2_C 344..456 CDD:463563 19/75 (25%)
Blue background indicates that the domain is not in the aligned region.

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