DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptx1 and pitx1

DIOPT Version :9

Sequence 1:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster
Sequence 2:NP_001035436.3 Gene:pitx1 / 678598 ZFINID:ZDB-GENE-060421-3623 Length:285 Species:Danio rerio


Alignment Length:323 Identity:136/323 - (42%)
Similarity:179/323 - (55%) Gaps:70/323 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 STHLNNFQTSSTSSISNRSRDRKDGNRSVNETTIKTENISSSGHDEPMTTSGEEPKNDKKNKRQR 265
            |.||....:|:..::.|.|.:..|...:..|.::  |..|..|:           .:|.|.|:||
Zfish     8 SFHLPRSASSTRETLENTSSESSDTEAAEKERSV--EQRSDDGN-----------ADDPKKKKQR 59

  Fly   266 RQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMWTNLTEARVRVWFKNRRAKWRKRERNAMNAA 330
            |||||||||||||||.||.||||||||||||||:||||||||||||||||||||||||||..   
Zfish    60 RQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ--- 121

  Fly   331 VAAADF-KSGFGTQF---MQPFADDSLYSSYPYNNWTK---VPSPLGTKPFPW--PVNPLGSMVA 386
               .|. |:.:..||   |||:  |.:|.:|.|||||.   .|:||.||.|.:  .::||     
Zfish   122 ---MDLCKNSYLPQFSGLMQPY--DDVYPTYTYNNWTNKGLTPAPLSTKNFTFFNSMSPL----- 176

  Fly   387 GNHHQNSVNCFNTGASGVAVSMNNA---SMLPGSMGSSLSNTSNVGAVG----------APCPYT 438
                 .|.:.|:..:|..::||.:.   |.:||...:.|:|..|:..:|          :.|||.
Zfish   177 -----TSQSMFSAPSSISSMSMASGMGHSAVPGMPTTGLNNIGNLNGIGGSTINPAMSSSTCPYG 236

  Fly   439 TPANPY-MYRSAAEPCMSSSMSSSIATLRLKAKQHASAGFGSPYSAPSPVSRSNSAGLSACQY 500
            .|.:|| :||   :.|     :||:||||||:|||.|.|:..        .:|..:.|:||||
Zfish   237 PPVSPYSVYR---DTC-----NSSLATLRLKSKQHPSFGYSG--------LQSPGSSLNACQY 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptx1NP_001138130.2 Homeobox 268..320 CDD:278475 48/51 (94%)
pitx1NP_001035436.3 COG5576 8..>126 CDD:227863 74/136 (54%)
Homeobox 62..114 CDD:278475 48/51 (94%)
OAR 247..263 CDD:281777 10/20 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 116 1.000 Domainoid score I5907
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 219 1.000 Inparanoid score I3550
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1432356at2759
OrthoFinder 1 1.000 - - FOG0001767
OrthoInspector 1 1.000 - - otm26409
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45882
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
99.070

Return to query results.
Submit another query.