DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptx1 and repo

DIOPT Version :9

Sequence 1:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster
Sequence 2:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster


Alignment Length:680 Identity:155/680 - (22%)
Similarity:231/680 - (33%) Gaps:194/680 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GGCGGG--GGLGVGVVTSSATALGPGGLTNGGGGVVSGALNGLEAMSAESTGLCLQD-------- 62
            |..|||  ..||...:..:.||:.|         |:.|:::          .||.|.        
  Fly    12 GEFGGGPLNPLGAKPLMPTTTAMHP---------VMLGSVH----------ELCSQQQQQQQQQR 57

  Fly    63 ------LVSAGTANGAGSAGSAESATTTSTALSSGSTGSSTVNGGG--SSTSGTEHL-------- 111
                  ::..|...||||.|:..|....        |....||..|  |.:...|::        
  Fly    58 LPDCNTILPNGGGGGAGSGGAGGSPNYV--------TKLDFVNKMGCYSPSQKYEYISAPQKLVE 114

  Fly   112 ----HSHHSLHDSSSSVSISPAISSLMPISSLSHLHHSAGQDLVGGYSQHPHHTVVP-PHTPK-- 169
                ..||..|....:.:..|:.:.::.....|.......|.|||....||.:..:. ..:||  
  Fly   115 QQQQQQHHHQHHQHYTATPPPSHNGILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQ 179

  Fly   170 HEPLEKLRIWAETGDFRDSHSSMTAVANSLDSTHLNN-----FQTSSTSSISNRSRDRK------ 223
            :||.:...::..:....|               ||::     .|.||...|:..|...|      
  Fly   180 YEPQQLQHLYGGSPHHLD---------------HLDHGSDGLLQDSSPVMINGGSAGGKLKKPDE 229

  Fly   224 ----------------DGNRSVNETTIKTENISSS---------------GHDEPMTT---SGEE 254
                            ..:..||.||..|.|.:||               |...|...   |..:
  Fly   230 MCSQLEAGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSK 294

  Fly   255 PKNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMWTNLTEARVRVWFKNRRAKW 319
            .|.|....::::.||.||:.||:|||..|.|..|||:..|||:|:..||:|:||:|||:||||||
  Fly   295 KKGDPNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKW 359

  Fly   320 RKRERNAMNAAVAAADFKSGFGTQFMQPFADDSLYSSYPYNNWTKVPSPLGTKPFPWPVNPLGSM 384
            ||.|          ...|:|:......|.|        ..|..|..| |..:.|....|.|.|||
  Fly   360 RKHE----------PPRKTGYIKTSTPPTA--------TLNPGTLAP-PFTSYPQTTTVTPPGSM 405

  Fly   385 VAGNHHQNSVNCFNTGASGVAVSMNNASMLPGSMGSSLSNTSNVGAVGAPCPYTTPA---NPYMY 446
            .:...:|.                      |..:....|..|     .|..||.|.:   ..|::
  Fly   406 DSWTSYQT----------------------PYELTPQFSLLS-----PAASPYGTYSGQYGAYVH 443

  Fly   447 RSAAEPCMSSSMSSSIATLRLKAKQHASAGFGSPYSAPSPVSRSNSAGLSACQYTGVGVTDVVXE 511
            .|...| |......|...:.:.|...:.||.|.     ..|:...|...:..|      |... :
  Fly   444 ESQLFP-MRHYEYGSPTRMEMGATTGSVAGNGD-----ESVANGGSYQTAELQ------TAQQQQ 496

  Fly   512 NALGALLNQHQHHLQHFSGGSVGGSGVPNGMQQHSGNMLHHSNLGLDHSDLGLVGGGPSNH--QD 574
            .|.|.|:..|.|..|......:.|..:.....::.....|.|..||:.|.      |.|.|  :.
  Fly   497 LADGTLVTVHAHQQQQQQQQQLNGKYLSAEEAKYVHLQCHQSGGGLELSP------GASCHLVEA 555

  Fly   575 EGNHSLEGSNKSPMEAPLANSSNNNNNDND 604
            :|.|.:     :......|::...:::|||
  Fly   556 QGQHYV-----TTATGGAASAGGTSSDDND 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptx1NP_001138130.2 Homeobox 268..320 CDD:278475 31/51 (61%)
repoNP_477026.1 Homeobox 313..360 CDD:278475 27/46 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450935
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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