DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptx1 and pax3

DIOPT Version :10

Sequence 1:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster
Sequence 2:XP_012825755.1 Gene:pax3 / 448464 XenbaseID:XB-GENE-482740 Length:486 Species:Xenopus tropicalis


Alignment Length:377 Identity:99/377 - (26%)
Similarity:135/377 - (35%) Gaps:125/377 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 STSSISN--RSR-----------DRKDGNRSVNETT-----IKTENISSSGHDEPMTTSGEEPKN 257
            |.||||.  ||:           |||:...|.....     |..|...:|...|..:....||..
 Frog   151 SVSSISRILRSKFGKGDEEDIELDRKEQEESEKRAKHSIDGILRERAPASPESEEGSDIDSEPDL 215

  Fly   258 DKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMWTNLTEARVRVWFKNRRAKWRKR 322
            ..|.| |||.||.||::||:|||..|.|..|||:.||||:|....||||||:|||.||||:|||:
 Frog   216 PLKRK-QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 279

  Fly   323 ERNAMNAAVAAADFKSGFGTQFMQPFADDSLYSSYPYNNWTKVPSPLGTKPFPWPVNPLGSMVAG 387
            .                 |...:..| :..:..::|              |...|..|       
 Frog   280 A-----------------GANQLMAF-NHLIPGAFP--------------PAAMPALP------- 305

  Fly   388 NHHQNSVNCFNTGASGVAVSMNNASMLPGSMGSSLSNTSNVGAVGAPCPYTT------PANPYMY 446
                             ...::..|..|.|:..::|:.||......|.|.::      |:||   
 Frog   306 -----------------TYQLSETSYQPTSIPQAVSDPSNTVHRPQPLPPSSVHQSSLPSNP--- 350

  Fly   447 RSAAEPCMSSSMSSSIATLRLKAKQHASAGFGS------PYSAPS-PVSRSNSAGLSACQYTGVG 504
            .|::..|:.|.             :|   ||.|      |.|.|| |::.:...|||        
 Frog   351 ESSSAYCLPSG-------------RH---GFSSYTDSFVPPSGPSNPMNPAIGNGLS-------- 391

  Fly   505 VTDVVXENALGALLNQ----HQHHLQHFSGGSVGGSGVPNGMQQHSGNMLHH 552
                  ...:|.|.|.    ||....:......||...|..:.......|.|
 Frog   392 ------PQVMGLLTNHGGVPHQPQTDYALSPLTGGLEPPTAVSASCSQRLEH 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptx1NP_001138130.2 Homeodomain 265..321 CDD:459649 35/55 (64%)
pax3XP_012825755.1 PAX 35..162 CDD:238076 6/10 (60%)
Homeodomain 222..278 CDD:459649 35/55 (64%)
Pax7 349..393 CDD:403540 17/76 (22%)

Return to query results.
Submit another query.