DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptx1 and lms

DIOPT Version :10

Sequence 1:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster
Sequence 2:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster


Alignment Length:380 Identity:78/380 - (20%)
Similarity:135/380 - (35%) Gaps:114/380 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 ETTIKTEN------ISSSGHDEPMTTS---------------GEEPKNDKKNKRQRRQRTHFTSQ 274
            |.:::.|:      :.:|....|.|:|               ..:..|...:.|::|.||.|::.
  Fly    32 EDSVQDESGRGGNCLGASRASSPATSSCLDDNMDDGKSDIDLASDDGNGLGDDRKKRPRTAFSAA 96

  Fly   275 QLQELEHTFSRNRYPDMSTREEIAMWTNLTEARVRVWFKNRRAKWRKRERNAMNAAVAAADFKSG 339
            |::.||..|.|.:|..::.|..:|....|||.::::||:|||.||:::..:.:....:....:.|
  Fly    97 QIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLG 161

  Fly   340 FGTQFMQPFADDSLYSSYPYNNWTKVPSPLGTKPFPWPVNPLGSMVAGNHHQNSVNCFNTGASGV 404
            .|.........|.|        |....:|.|    |.|:..:  |:.|              ||.
  Fly   162 IGGLARPMVVGDRL--------WLFSQTPTG----PTPIQSI--MLNG--------------SGS 198

  Fly   405 AVSMNNASMLPGSMGSSLSNTSNVGAVGAPCPYTTPANPYMYRSAAEPCMSSSMSSSIATLRLKA 469
            |..|.:|:...||                      |..||.......|....|:        :::
  Fly   199 AAPMASATTATGS----------------------PMRPYATSGGMPPLPGPSV--------MES 233

  Fly   470 KQHASAGFGSP--YSAPSPVSRSNSAGLSACQYT------GVGVTDVVXENALGALLNQHQHHLQ 526
            .::|....|.|  ::.|..|::..:.|:.|..|.      .....|      ..|.|..::.:||
  Fly   234 ARNAILARGQPLNFALPFGVAKPPAGGVPAASYIPRCKPYATSYVD------YAASLPTNESYLQ 292

  Fly   527 ---------HFSGGSVG--------GSGVPNGMQQHS----GNMLHHSNLGLDHS 560
                     ..||.|.|        |....|.:||.|    |....:.:.||:.:
  Fly   293 MKYATLPPEAESGASNGLAELERVFGDANANFLQQRSTPVAGTATAYGHDGLNQA 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptx1NP_001138130.2 Homeodomain 265..321 CDD:459649 22/55 (40%)
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 14/72 (19%)
Homeodomain 87..143 CDD:459649 22/55 (40%)

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