DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptx1 and unc-4

DIOPT Version :9

Sequence 1:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster
Sequence 2:NP_001285389.1 Gene:unc-4 / 32757 FlyBaseID:FBgn0024184 Length:588 Species:Drosophila melanogaster


Alignment Length:613 Identity:139/613 - (22%)
Similarity:203/613 - (33%) Gaps:189/613 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 SSGSTGSSTVNGGGSSTSGTEHLHSHHSLHDSSSSVSISPAISSLMPISSLSHLHH-SAGQDLVG 152
            |.|.|.....|...||.|...:.|::::.:.|...:......||....:|:.:.|. :|||.|:|
  Fly     6 SEGDTKKFLTNNNNSSASRNNNSHNNNNNNHSPKEIPEETGRSSSTSSNSIPNAHRTNAGQHLLG 70

  Fly   153 GY---------------SQHPHHTV-----------------VPPHTP-----------KHEP-L 173
            |.               |:..|.|.                 |||..|           .:.| |
  Fly    71 GSPSSACSTSVSGCGMPSEGLHPTAALQLYAAAAQLAPNGVRVPPWGPFLQFGVPGVFGPNGPFL 135

  Fly   174 EKLRIWAETGDFRDSHSSMTAVANSLDSTHLNNFQTS----STSSISNRSRDRKDGNRSVNETTI 234
            .:.|..|.:.....:.::..|.|..:.:.:.:|...:    |.:::.|.|..:.....:|..|..
  Fly   136 GRPRFDAASAGGHPNSAAAAAAATQMAAVNASNAFANLTGLSAAALRNVSAAQTTAVAAVASTVA 200

  Fly   235 KTENISSSGHDEPMTTSG--EEPKN-----------DKKNKRQRRQRTHFTSQQLQELEHTFSRN 286
            ..::....|:.:.:..:|  .|..|           |....::||.||:|.|.||:|||..||.:
  Fly   201 TIQHRLMIGNRQSLPPAGPPSEGSNEDGGFPGDGDDDSSAAKRRRSRTNFNSWQLEELERAFSAS 265

  Fly   287 RYPDMSTREEIAMWTNLTEARVRVWFKNRRAKWRKRE-------RNAMNAAVAAADFKSGFGTQF 344
            .|||:..||.:||..:|.|:||.|||:|||||.||||       |.|.||.....   ||     
  Fly   266 HYPDIFMREALAMRLDLKESRVAVWFQNRRAKVRKREHTKKGPGRPAHNAQPQTC---SG----- 322

  Fly   345 MQPFADDSL--------------------------------------YSSYPYNNWTKVPSPL-- 369
             :|...:.|                                      |.|....|.|...|.|  
  Fly   323 -EPIPPNELKAKERARRRKKLAKAIDRQARKLQAKGITVDLEALKAEYISQHKANGTFSDSDLED 386

  Fly   370 ----------------GTKPFPWPVNPLG---------SMVAGNHHQNSVNCFNTGASGVAVSMN 409
                            |......||. ||         ....|....:|::|   |..|...|..
  Fly   387 DGIQIDVVGGTDSDDEGDSDAVSPVR-LGGGGGGGGGTGGGGGGGASSSLHC---GLDGDGDSSR 447

  Fly   410 NASMLPGSMGSSLSNTSNVGAVGAPCPYTTPANPYMYRSAAEPCMSSSMSSSIATLRLKAKQHAS 474
            ..|.:.|.           |::|:|            .|.|.|.|.|:.:.....|. ....:.|
  Fly   448 AGSFIGGG-----------GSLGSP------------SSVAPPSMLSNGAVQFGKLE-PMDGNES 488

  Fly   475 AGFGSPYSAPSPV-------------SRSNSAGLSACQYTGVGVTDVVXENALGALLNQHQHHLQ 526
            ........:|.|:             |.....||...|..|.|      .:..|...|.|||||.
  Fly   489 EERDRERDSPKPLLFPAKAFHQLNLQSSQQHHGLVVGQGQGSG-----SGHGHGHQHNHHQHHLH 548

  Fly   527 HFSGGSVGGSGVPNGMQQHSGNMLHHSN 554
            |.|..:...:.|.|.:.|.|...:..||
  Fly   549 HGSASASAAAAVANLVHQTSPISMRRSN 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptx1NP_001138130.2 Homeobox 268..320 CDD:278475 30/51 (59%)
unc-4NP_001285389.1 Homeobox 246..299 CDD:278475 30/52 (58%)
NK <327..>368 CDD:302627 1/40 (3%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450910
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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