DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptx1 and Vsx2

DIOPT Version :9

Sequence 1:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster
Sequence 2:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster


Alignment Length:657 Identity:151/657 - (22%)
Similarity:235/657 - (35%) Gaps:156/657 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 ESTGLCLQDLVSAGT--ANGAGSAGSAESAT---------TTSTALSSGSTGSSTVNGG-GSSTS 106
            |..||.:.....|.|  ...||:..:.|..|         |.:||.:|.:|.::..|.. |:.||
  Fly    11 ELLGLAVAAATEAPTDLTTTAGATVAKERQTPTPPKTTNATMATAATSAATAATPTNAAEGNLTS 75

  Fly   107 GTE-------------HLHSHHSLHDSSSSVSISPA------------ISSLMP--ISSLSHLHH 144
            .:|             |...||..:.....::::.|            .::.||  :::..|.||
  Fly    76 VSEPQQQPQQQQQEQQHHQPHHHQYREHHQMTMAAASRMAYFNAHAAVAAAFMPHQLAAAVHHHH 140

  Fly   145 SAGQDLVGGYSQHPHHTVVPPH-----TPKHEPLEKLRIWAETGDFRDSHSSMTAVANSLDSTHL 204
            .      ..:..||||....||     .|...|::          ....|.....:.::.....|
  Fly   141 Q------HQHQHHPHHHPHHPHGAVGGPPPPPPMQ----------HHHPHHPHHPLLHAQGFPQL 189

  Fly   205 NNFQTSSTSSISNRSRDRKDGNRSVNETTIKTENISSSGHDEPMTTSGEEPKNDKKNKRQRRQRT 269
            .:|...:.:.:......:..|..|:|                   ..|..|.:.||.|::|..||
  Fly   190 KSFAAGAGTCLPGSLAPKDFGMESLN-------------------GFGVGPNSKKKKKKRRHSRT 235

  Fly   270 HFTSQQLQELEHTFSRNRYPDMSTREEIAMWTNLTEARVRVWFKNRRAKWRKRERNAMNAAVAAA 334
            .|||.||::||..|....|||:..||.:::.|.|.|.|::|||:||||||||.|:....:.:.|.
  Fly   236 IFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAE 300

  Fly   335 DFKSGFGTQFMQPFADDSLYSSYPYNNWTKVPSPLGTKP-------------------FPWPVNP 380
            ....|...:...|..|..|.|:  .:|....|..||.:.                   .....:.
  Fly   301 YGLYGAMVRHSLPLPDTILKSA--KDNDAVAPWLLGMEQKCMHRKSIEAQSALKDDSGVSDHEDS 363

  Fly   381 LGSMVAGNHHQNSVNCFNTGASGVAVSMNNASMLPGSMGSSLSN----TSNVGAVG-APCPYTTP 440
            .||..|.:...:...|....:|  ..|:|..|..|.|..:|.|.    ||..|..| |....|||
  Fly   364 AGSKSAHSEDLSRSRCHALSSS--TESLNVVSPAPSSCPTSASTSAPPTSTSGYAGAASSAATTP 426

  Fly   441 ANPYMYRSAAEPCMS----SSMSSSIATLRLKAKQHAS--AGFGSPYSAPSPVS------RSNSA 493
            .......|::.|.:.    |........|:.:.:|.||  .|.|:..:..:|.|      .:|:|
  Fly   427 TGASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQASLYLGAGAVVTGCAPPSYHPLLDAANAA 491

  Fly   494 GLSAC----QYTGVGVTDVVXENALGALLNQHQHHLQHFSGGSVGGSGV-------------PNG 541
            |..|.    .:..:..|.|.   |..|...|||...|.....:....|:             |:.
  Fly   492 GAGAAASSKDFHMIMNTAVAA--AAAAAQQQHQQQQQQQQQATATAPGLHAHNLAAALMEHDPDA 554

  Fly   542 M------------QQHSGNMLHHSNLGLDHSDLGLVGGGPSNHQDEGNH---SLEGSNKSPMEAP 591
            .            |:|...:|::..|.|   .:.....|.:..||..:.   |.|.:|.||:..|
  Fly   555 FRNNSIACLRAKAQEHQARLLNNGGLFL---QVRRFAQGQAQIQDPSDMLKLSEEHNNNSPIPIP 616

  Fly   592 LANSSNN 598
            .|:|:.|
  Fly   617 PAHSTVN 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptx1NP_001138130.2 Homeobox 268..320 CDD:278475 27/51 (53%)
Vsx2NP_001284897.1 Homeobox 233..286 CDD:278475 27/52 (52%)
OAR 556..570 CDD:281777 1/13 (8%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450927
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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