DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptx1 and Vsx2

DIOPT Version :10

Sequence 1:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster
Sequence 2:NP_001288356.1 Gene:Vsx2 / 12677 MGIID:88401 Length:380 Species:Mus musculus


Alignment Length:443 Identity:110/443 - (24%)
Similarity:169/443 - (38%) Gaps:118/443 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 GSAGSAESATTTSTALSSGSTGSSTVNGGGSSTSGTEHL----HSHHSLHDSSSSVSISP----- 128
            |.||.|.|...:.|...|.|.|:.....|    .|.:.:    ....|.|..::...::|     
Mouse     3 GKAGEALSKPKSETVAKSTSGGAPARCTG----FGIQEILGLNKEPPSSHPRAALDGLAPGHLLA 63

  Fly   129 AISSLMP--ISSLSHLHHSAGQDLVGGYSQHPHHTVV-PPHTPKHEPLEKLRIWAETGDFRDSHS 190
            |.|.|.|  :.|:..|....   |.|.|:|.....|: .|.:...:||.:               
Mouse    64 ARSVLSPAGVGSMGLLGPGG---LPGFYTQPTFLEVLSDPQSVHLQPLGR--------------- 110

  Fly   191 SMTAVANSLDSTHLNNFQTSSTSSISNRSRDRKDGNRSVNETTIKTENISSSGHDEPMTTSGEEP 255
                .:..||::     ||:|:.|....|.|||....::|:|                       
Mouse   111 ----ASGPLDTS-----QTASSDSEDVSSSDRKMSKSALNQT----------------------- 143

  Fly   256 KNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMWTNLTEARVRVWFKNRRAKWR 320
                |.:::||.||.|||.||:|||..|:...|||:..||.:||.|.|.|.|::|||:|||||||
Mouse   144 ----KKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204

  Fly   321 KRERNAMNAAVAAADFKSGFGTQFMQPFADDSLYSSYPYNNWTKVPSPLGTKPFPWPVNP----- 380
            |||:....::|.|.....|...:...|..:..|.|:......:..|..|....||...:.     
Mouse   205 KREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLVQDGFPRRFSKPEYQQ 269

  Fly   381 --LGSMVAGNHHQNSVNCFNTGASGVAVSMNNASMLPGSMGSSLSNTSNVGAVGAPCPYTTPANP 443
              ||.      |:.|:..  ...||....:...::                          |...
Mouse   270 FFLGM------HKKSLEA--AAESGRKPEVERQAL--------------------------PKLD 300

  Fly   444 YMYRSAAEPCMSSSMS------SSIATLRLKAKQHASAGFGSPYSAPSPVSRS 490
            .|.:....|...:::|      :|||.||.||::|::...|: .|.|..::|:
Mouse   301 KMEQEERAPEAQAAISQEELRENSIAALRAKAQEHSTKVLGT-VSGPDSLARN 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptx1NP_001138130.2 Homeodomain 265..321 CDD:459649 33/55 (60%)
Vsx2NP_001288356.1 Homeodomain 153..205 CDD:459649 30/51 (59%)
OAR 319..337 CDD:461067 8/17 (47%)

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