DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sap-r and Sftpb

DIOPT Version :9

Sequence 1:NP_524597.1 Gene:Sap-r / 43662 FlyBaseID:FBgn0000416 Length:953 Species:Drosophila melanogaster
Sequence 2:NP_620197.2 Gene:Sftpb / 192155 RGDID:621700 Length:376 Species:Rattus norvegicus


Alignment Length:511 Identity:93/511 - (18%)
Similarity:170/511 - (33%) Gaps:165/511 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LAVLALCCAFGVFAAATPLLGSSKCTWGPSYWCGNFSNSKECRATRHCIQTVWETQKVPVDTDSI 71
            |.:|...|:.|   |||....|..|..||.:||.:...:.:|||..||:|.||.    ....:.:
  Rat     9 LLLLPTLCSLG---AATESASSPDCAQGPKFWCQSLEQAIQCRALGHCLQEVWG----HAGANDL 66

  Fly    72 CTICKDMVTQARDQLKSNQTEEELKEVFEGSCKLIPIKPIQKECIKVADDFLPELVEALASQMNP 136
            |..|:|:|.......|.:..::.:::..|..|.::|:|.:...|.:|.|.:||.:::....|:.|
  Rat    67 CQECEDIVHLLTKMTKEDAFQDTIRKFLEQECDILPLKLLVPRCRQVLDVYLPLVIDYFQGQIKP 131

  Fly   137 DQVCSVAGLCNSARIDELYKNGIQAGLDGTVQNEDDSSEETELAMQPNQLSCGNCNLLSRLMHSK 201
            ..:||..|||...                          :|:...:|..|               
  Rat   132 KAICSHVGLCPLG--------------------------QTKPEQKPEML--------------- 155

  Fly   202 FAATDRDDMVETMLHMCGSLSSFSDACANIVLTYFNDIYDHVSKHLTTDAVCHVSGVCASRYHQH 266
                                    ||..|.:|           ..|...|   :.|...:|...|
  Rat   156 ------------------------DAIPNPLL-----------NKLVLPA---LPGAFLARPGPH 182

  Fly   267 EEEKQPQEALVALDAGDDIPCELCEQLVKHLRDVLVANTTETEFKQ-------VMEGFCKQSKGF 324
            .::...|:..:.|..     |.||..|:|.::.|:..........|       |:.|.|      
  Rat   183 TQDLSEQQLPIPLPF-----CWLCRTLIKRVQAVIPKGVLAVAVSQVCHVVPLVVGGIC------ 236

  Fly   325 KDECLSIVDQYYHVIYETLVSKLDANGACCMIGICQKNSASSMKDVPIMPLLPVIEPAQVKITIE 389
              :||:  ::|..::.:.|:.::.....|.::..|....|       |.|.||.:||...|..::
  Rat   237 --QCLA--ERYTVLLLDALLGRVVPQLVCGLVLRCSTADA-------IGPALPALEPLIEKWPLQ 290

  Fly   390 KLEKHEKKQLGASEPKFSQQEILDMQLPIDHLMGAANPGALVEGGELCTLCEYMLHFIQETLATP 454
            ..|                                            |..|:.:::     .|..
  Rat   291 DTE--------------------------------------------CHFCKSVIN-----QAWN 306

  Fly   455 STDDEIKHTVENICAKLPSGVAGQCRNFVEMYGDAVIALLVQGLNPRDVCPLMQMC 510
            :::..:...:...|.:.... ..:|..|||.:...::||:.:..:....|..:.:|
  Rat   307 TSEQAMPQAMHQACLRFWLD-RQKCEQFVERHMPQLLALVPRSQDAHTSCQALGVC 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sap-rNP_524597.1 SapA 27..59 CDD:295328 12/31 (39%)
SapB 70..146 CDD:214797 19/75 (25%)
SapB_1 72..106 CDD:282970 7/33 (21%)
SapB_2 115..146 CDD:281486 10/30 (33%)
SapB 186..259 CDD:214797 8/72 (11%)
SapB_2 228..259 CDD:281486 5/30 (17%)
SapB 285..359 CDD:214797 15/80 (19%)
SapB_1 287..320 CDD:282970 10/39 (26%)
SapB_2 328..359 CDD:281486 5/30 (17%)
SapB 436..510 CDD:214797 11/73 (15%)
SapB_1 437..471 CDD:282970 4/33 (12%)
SapB_2 479..510 CDD:281486 7/30 (23%)
SapB 535..610 CDD:214797
SapB_1 537..571 CDD:282970
SapB_2 579..610 CDD:281486
SapB 666..739 CDD:214797
SapB_1 666..700 CDD:282970
SapB_2 708..739 CDD:281486
SapB 775..849 CDD:214797
SapB_1 777..811 CDD:282970
SapB_2 819..849 CDD:281486
SapB 859..938 CDD:214797
SftpbNP_620197.2 SapA 29..59 CDD:413340 12/29 (41%)
SapB 65..141 CDD:214797 19/75 (25%)
SapB 196..267 CDD:214797 15/85 (18%)
SapB 293..361 CDD:214797 12/117 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166344986
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1340
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D277021at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11480
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.810

Return to query results.
Submit another query.