DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12071 and RBAK

DIOPT Version :10

Sequence 1:NP_651832.3 Gene:CG12071 / 43660 FlyBaseID:FBgn0039808 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_066986.1 Gene:RBAK / 57786 HGNCID:17680 Length:714 Species:Homo sapiens


Alignment Length:229 Identity:60/229 - (26%)
Similarity:85/229 - (37%) Gaps:47/229 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 SRLKALQQVQQASSGVRKTNPSKSTNKAFECTVCGKGLARKDKLTIHMRIHTGEKPYICEVCNKA 221
            ||..||...|:..:|          .|.::|..|||...||..|..|.|.|||||||.|..|.|.
Human   383 SRKSALSDHQRTHTG----------EKLYKCNECGKSYYRKSTLITHQRTHTGEKPYQCSECGKF 437

  Fly   222 FARRDKLVIHMNKFKHVTPTNIAPLGKRLN--------NMVKKKEQPDPPPEDNK---------Q 269
            |:|...|.||........|......||..|        ..|..:|:.....|..|         .
Human   438 FSRVSYLTIHYRSHLEEKPYECNECGKTFNLNSAFIRHRKVHTEEKSHECSECGKFSQLYLTDHH 502

  Fly   270 SLELQLQQQAVQVAAQNIIVQSAQGAPTSIPGIIIPHHQQQLSWTCELCGRMFSSRDEWSIHAKS 334
            :..|:.:........:..:|.||......:|       :.:.|:.|.:||::|:....::.|.:|
Human   503 TAHLEEKPYECNECGKTFLVNSAFDGHQPLP-------KGEKSYECNVCGKLFNELSYYTEHYRS 560

  Fly   335 HLEYXQPERLVAESTKPAAAAAGVIAKTTSSNNS 368
            |.|           .||...:.  ..||.|.|:|
Human   561 HSE-----------EKPYGCSE--CGKTFSHNSS 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12071NP_651832.3 zf-C2H2 185..207 CDD:395048 9/21 (43%)
C2H2 Zn finger 187..207 CDD:275368 9/19 (47%)
zf-H2C2_2 200..224 CDD:463886 14/23 (61%)
C2H2 Zn finger 215..232 CDD:275368 7/16 (44%)
RBAKNP_066986.1 KRAB 8..68 CDD:214630
C2H2 Zn finger 165..199 CDD:275368
Required for interaction with RB1. /evidence=ECO:0000269|PubMed:10702291 171..260
C2H2 Zn finger 207..227 CDD:275368
SUF4-like 259..>307 CDD:411020
C2H2 Zn finger 263..284 CDD:411020
C2H2 Zn finger 263..283 CDD:275368
C2H2 Zn finger 291..311 CDD:275368
zf-C2H2 317..339 CDD:395048
C2H2 Zn finger 319..339 CDD:275368
COG5048 343..701 CDD:227381 60/229 (26%)
C2H2 Zn finger 347..367 CDD:275368
C2H2 Zn finger 375..395 CDD:275368 5/11 (45%)
C2H2 Zn finger 403..423 CDD:275368 9/19 (47%)
Interaction with AR. /evidence=ECO:0000269|PubMed:14664718 417..714 46/185 (25%)
C2H2 Zn finger 431..451 CDD:275368 8/19 (42%)
C2H2 Zn finger 459..479 CDD:275368 3/19 (16%)
C2H2 Zn finger 513..533 CDD:275368 3/19 (16%)
C2H2 Zn finger 541..561 CDD:275368 5/19 (26%)
C2H2 Zn finger 569..589 CDD:275368 5/15 (33%)
C2H2 Zn finger 597..617 CDD:275368
C2H2 Zn finger 625..645 CDD:275368
C2H2 Zn finger 653..673 CDD:275368
C2H2 Zn finger 681..701 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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