DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12071 and ham

DIOPT Version :10

Sequence 1:NP_651832.3 Gene:CG12071 / 43660 FlyBaseID:FBgn0039808 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster


Alignment Length:588 Identity:96/588 - (16%)
Similarity:181/588 - (30%) Gaps:236/588 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DKMTVAQKNAYLEAHMAVQQQMAQAAIQFKQQQTSQ----QQNSPTANNNNNSQNNGNMQQQQQQ 62
            ||:|  :|....:|...::::....|.:.::.::..    :.......|::.|:...:|:|:.::
  Fly   651 DKVT--EKELVFKAEEKLKKEPLVQAFEGEEDESRSSLDIKGKLEDTRNDSKSEEQDDMKQEPER 713

  Fly    63 QQQQQQQQQQQQQQQHYAATIKVPQISSS--------NVAAAAAGESTFTVP-DDGMGF------ 112
            .....|||.:..::.....:...|..:.|        ::....:..|.||.| :|.:..      
  Fly   714 VSTPDQQQAEDDRKSIDIMSTPPPADTPSGGDGPLDLSICRKRSAGSFFTAPAEDNLMLHRFMPR 778

  Fly   113 ------EGGVRVLQSLGTWSAAEQLTYN------------IPKPNLIPFTEPYV----------E 149
                  |.| :.|:...:.|:||..|..            ...|.|.|...|..          |
  Fly   779 LHEFEAERG-QPLKMRKSHSSAESSTSQKSHKGSSPTPTPTASPGLTPSPSPPTSAGGELSSTSE 842

  Fly   150 GGSM------------------------HPASRLKALQQVQQ----------------------- 167
            ||::                        ||......|:::.:                       
  Fly   843 GGAVPTMAAAAFAADHSALASGPTLPQTHPTFHPLLLEEIYRSGFPFLCQPGGRRGIEALLAGAA 907

  Fly   168 -ASSGVRKTNPSK---------STNKAFECTVCGKGLARKDKLTIHMRIHTGEKPYICEVCNKAF 222
             |::..|...|.|         .|...:.|..|||...|...||.|:|.||||:||.|:.|::||
  Fly   908 SAAAPKRPLPPVKFSAGSVVGLKTKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYPCKYCDRAF 972

  Fly   223 ARRDKLVIHMNKFKHVTPTNIAPLGKRLNNMVKKKEQPDPPPEDNKQSLELQLQQQAVQVAAQNI 287
            :      |..|..:||         :.::|    ||:|                           
  Fly   973 S------ISSNLQRHV---------RNIHN----KERP--------------------------- 991

  Fly   288 IVQSAQGAPTSIPGIIIPHHQQQLSWTCELCGRMFSSRDEWSIHAKSHLEYXQPERLVAESTKPA 352
                                     :.||||.|.|..:.....|.|.|    :.|   ..:.:.:
  Fly   992 -------------------------FRCELCDRSFGQQTNLDRHVKKH----ESE---GNNFRDS 1024

  Fly   353 AAAAGVIAKTTSSNNSRNYQMDANQNQIQMEAQARKQKIIIQNQMILNASHQQQQQPQQHPQQQQ 417
            .:::|:..:....::.|.:.                .::...|.:..|     :...:::|    
  Fly  1025 PSSSGIAEREEYFDDIRKFM----------------NRVYTPNSLAGN-----EGDTEEYP---- 1064

  Fly   418 HQQQQQQHVAHGKKAARKHQQHLQQQQQQQQQQQQQQQQQQQQTSAPMYNNNSSSNHNGNNQSQE 482
                                     ....|....::........|:.:.||||||.:| ||.|:.
  Fly  1065 -------------------------NSDDQSVNLEKDSGNFNNNSSNISNNNSSSGNN-NNSSKA 1103

  Fly   483 VSV 485
            :::
  Fly  1104 ITI 1106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12071NP_651832.3 zf-C2H2 185..207 CDD:395048 9/21 (43%)
C2H2 Zn finger 187..207 CDD:275368 9/19 (47%)
zf-H2C2_2 200..224 CDD:463886 14/23 (61%)
C2H2 Zn finger 215..232 CDD:275368 5/16 (31%)
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978
C2H2 Zn finger 341..363 CDD:275368
C2H2 Zn finger 371..392 CDD:275368
SFP1 <391..479 CDD:227516
C2H2 Zn finger 400..421 CDD:275368
SUF4-like 403..>445 CDD:411020
C2H2 Zn finger 403..421 CDD:411020
C2H2 Zn finger 429..449 CDD:275368
C2H2 Zn finger 457..477 CDD:275368
C2H2 Zn finger 486..504 CDD:275368
PTZ00121 <641..>728 CDD:173412 13/78 (17%)
COG5048 935..>1028 CDD:227381 37/170 (22%)
zf-C2H2 935..957 CDD:395048 9/21 (43%)
C2H2 Zn finger 937..957 CDD:275368 9/19 (47%)
zf-H2C2_2 949..973 CDD:463886 13/23 (57%)
C2H2 Zn finger 965..986 CDD:275368 8/35 (23%)
C2H2 Zn finger 994..1014 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.

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