Protein Alignment tll and Nr1i3

DIOPT Version :9

• Sequence 1: NP_524596.1
• Gene: tll / 43656
• FlyBaseID: FBgn0003720
• Length: 452
• Species: Drosophila melanogaster
• Sequence 2: XP_038947008.1
• Gene: Nr1i3 / 65035
• RGDID: 621400
• Length: 387
• Species: Rattus norvegicus
• Alignment Length: 418
• Identity: 90/418 - (21%)
• Similarity: 149/418 - (35%)
• Gaps: 104/418 - (24%)

  Fly    34 CKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFE 98
            |.||.|.::|.|:....|:||.|||:|::.::...:|..  .|.|.|.|..|..|.||||:||..
  Rat    21 CVVCGDRATGYHFHALTCEGCKGFFRRTVSKTIGPICPF--AGRCEVSKAQRRHCPACRLQKCLN 83

  Fly    99 VGMNKDAVQHERGPRNSTLRRHMAMYKDAMMGAGEMPQIPAEILMNTAALTGFPGVPMPMPGLPQ 163
            |||.||.:.....   ..|||.....:.|...:.::.|...|::...
  Rat    84 VGMRKDMILSAEA---LALRRARQARRRAQKASLQLSQQQKELIQTL------------------ 127

  Fly   164 RAGHHPAHM-------AAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRALP 221
             .|.|..|:       ..|:||....:                 ||..|.|            |.
  Rat   128 -LGAHTRHVGPMFDQFVQFRPPAYLFS-----------------HHRPFQP------------LA 162

  Fly   222 PTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAM--AQYLMPM 284
            |..||:.  |..:.....:.:.:.:.|.:..|..|.|.||:.||:.:..|...:::  ...|...
  Rat   163 PVLPLLT--HFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTQ 225

  Fly   285 NFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCHL--NIDSTEYECLR--------AISLF 339
            ||......|:.|:|           ||....|.|.:|.|  .:.|...|..:        .:.:|
  Rat   226 NFFCGPLCYKMEDA-----------VHGETVVQNTVCTLWYEVWSNGQEAAQPTISHSRVPVRVF 279

  Fly   340 RKSPPSASSTEDLANSSILTGSGSPNSSASAES--------RGLLESGKVAAMHNDARSALHNYI 396
            ....|...:.|.:|         :|.:...|..        .|:.:..::..:..:....|:|:|
  Rat   280 GVDHPLPQNPEKIA---------APGARVCAHGCHGSLLSWPGVTQREEIDQLQEEVALILNNHI 335

  Fly   397 QRTHPSQPMRF--QTLLGVVQLMHKVSS 422
            .........||  ..|:|::..:..::|
  Rat   336 MEQQSRLQSRFLYAKLMGLLAELRSINS 363

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
tll	NP_524596.1	NR_DBD_TLX	25..117	CDD:143537	31/82 (38%)
		NR_LBD	215..436	CDD:416257	43/230 (19%)
Nr1i3	XP_038947008.1	NR_DBD_VDR_like	21..92	CDD:143531	31/72 (43%)
		NR_LBD	116..385	CDD:416257	55/318 (17%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910