Protein Alignment tll and rxraa

DIOPT Version :9

• Sequence 1: NP_524596.1
• Gene: tll / 43656
• FlyBaseID: FBgn0003720
• Length: 452
• Species: Drosophila melanogaster
• Sequence 2: XP_005161240.1
• Gene: rxraa / 555578
• ZFINID: ZDB-GENE-070314-2
• Length: 500
• Species: Danio rerio
• Alignment Length: 460
• Identity: 124/460 - (26%)
• Similarity: 190/460 - (41%)
• Gaps: 112/460 - (24%)

  Fly     1 MQSSEGSPDMMDQ-KYNSVRLSPAASS----RILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKR 60
            |.|...|.|:... ..|.|...||..|    .:..|: |.:|.|.|||||||:|:|:||.|||||
Zfish   131 MNSVSSSEDIKPPLGLNGVMKVPAQPSGTPLSLTKHI-CAICGDRSSGKHYGVYSCEGCKGFFKR 194

  Fly    61 SIRRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKD-----AVQHERGPRNSTLRRH 120
            ::|:...|.|:..|.  ||:||..||:|:.||.:||..:||.::     |||.||
Zfish   195 TVRKDLTYTCRDNKD--CVIDKRQRNRCQYCRYQKCLAMGMKREVLLHTAVQEER---------- 247

  Fly   121 MAMYKDAMMGAGEMPQIPAEILMNTAALTGFPGVPMPMPGLPQRAGHHPAHMAAFQPPPSAAAVL 185
                           |...|...|....|......||:..:.:      |.:|.   .|.....:
Zfish   248 ---------------QRAKERSENEVESTSSANEDMPVEKILE------AELAV---EPKTETYI 288

  Fly   186 DLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRALPPTPPLMAAEHIKETAAEHLFKNVNWIKSV 250
            :.:||                             :|...|.....:|.:.|.:.||..|.|.|.:
Zfish   289 ETNVP-----------------------------MPSNSPNDPVTNICQAADKQLFTLVEWAKRI 324

  Fly   251 RAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMN----FAQLLFVYESENANREIMGMVTREVH 311
            ..|:|||:.||::||...|.|..|.:.:...:.:.    .|..|.|:.: :|:...:|.:...|
Zfish   325 PHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN-SAHSAGVGAIFDRV- 387

  Fly   312 AFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTEDLANSSILTGSGSPNSSASAESRGLL 376
             ..|:::::..:.:|.||..|||||.||                             :.:|:||.
Zfish   388 -LTELVSKMRDMQMDKTELGCLRAIVLF-----------------------------NPDSKGLS 422

  Fly   377 ESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIVR 441
            ..|:|.|:.....::|..|.:..:|.||.||..||..:..:..:....:|.|||.|.|||..|..
Zfish   423 NPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDT 487

  Fly   442 LISDM 446
            .:.:|
Zfish   488 FLMEM 492

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
tll	NP_524596.1	NR_DBD_TLX	25..117	CDD:143537	43/100 (43%)
		NR_LBD	215..436	CDD:416257	58/224 (26%)
rxraa	XP_005161240.1	Nuc_recep-AF1	63..159	CDD:288658	9/27 (33%)
		NR_DBD_RXR	166..247	CDD:143514	40/83 (48%)
		NR_LBD_RXR_like	267..478	CDD:132741	63/280 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X118
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.910