DRSC/TRiP Functional Genomics Resources

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Protein Alignment tll and nr4a1

DIOPT Version :9

Sequence 1:NP_524596.1 Gene:tll / 43656 FlyBaseID:FBgn0003720 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_001002173.1 Gene:nr4a1 / 431720 ZFINID:ZDB-GENE-040704-11 Length:574 Species:Danio rerio


Alignment Length:455 Identity:104/455 - (22%)
Similarity:171/455 - (37%) Gaps:137/455 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 QSSEGSPDMMDQKYNSVRLSPAASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSR 66
            |.|.....:||.     .|||...|.......|.||.|::|.:|||:..|:||.|||||:::::.
Zfish   212 QGSRDGSGLMDG-----HLSPKVRSPTGNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNA 271

  Fly    67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQHERGPRNSTLRRHMAMYKDAMMGA 131
            :|||.:.|.  |.|||..||:|:.||.:||..|||.|:.|:                        
Zfish   272 KYVCLANKD--CPVDKRRRNRCQFCRFQKCLAVGMVKEVVR------------------------ 310

  Fly   132 GEMPQIPAEILMNTAALTGFPGVPMPMPGLPQRAGHHPAHMAAFQPPPSAAAVLDLSVPRVPHHP 196
                         |.:|.|             |.|..|:...|.|...|.::.:::....|..|.
Zfish   311 -------------TDSLKG-------------RRGRLPSKPKAVQDSVSVSSPVNIIASLVTAHI 349

  Fly   197 VHQGHHGFFSPTAAYMN----ALATRALPPTPPLMAAEHIKE-----TAAEHLFKNVNWIKSVRA 252
            ..       :|.:|.::    ..:|..||....   |..|::     |.:..:.:  .|..|:..
Zfish   350 DS-------NPASANLDYSKYQESTSGLPEKED---ANDIQQFYDLLTGSMDVIR--KWAGSIPG 402

  Fly   253 FTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIM---GMV---TREVH 311
            |:.....||.||||.::.|.|||.:|              |.|.....:::   |:|   |:.|.
Zfish   403 FSAFCKEDQELLLESAFVELFILRLA--------------YRSNPETDKLIFCNGVVLHRTQCVR 453

  Fly   312 AF-------QEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTEDLANSSILTGSGSPNSSAS 369
            :|       .|....|..||:|.:.:.|                   ||...|:|          
Zfish   454 SFGDWIDSIMEFSQSLHRLNLDISAFSC-------------------LATLVIIT---------- 489

  Fly   370 AESRGLLESGKVAAMHNDARSALHNYIQRT--HPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRK 432
             :..||.|..::....|...:.|.:::..:  ...:|.....||..:..:..:.:..::.:|:.|
Zfish   490 -DRHGLKEPKRIEDFQNRLITCLRDHVSTSALEVGRPNSLSRLLSKLPELRTLCTQGLQRIFYLK 553

  Fly   433  432
            Zfish   554  553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tllNP_524596.1 NR_DBD_TLX 25..117 CDD:143537 37/91 (41%)
NR_LBD 215..436 CDD:416257 47/238 (20%)
nr4a1NP_001002173.1 NR_DBD_NGFI-B 237..311 CDD:143527 36/112 (32%)
NR_LBD_NGFI-B 337..574 CDD:132762 51/273 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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