DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tll and Hr78

DIOPT Version :9

Sequence 1:NP_524596.1 Gene:tll / 43656 FlyBaseID:FBgn0003720 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_001189151.1 Gene:Hr78 / 40378 FlyBaseID:FBgn0015239 Length:601 Species:Drosophila melanogaster


Alignment Length:588 Identity:128/588 - (21%)
Similarity:191/588 - (32%) Gaps:206/588 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQ 87
            |.:|..|....|.||.|.:||:|||..:|:||.||||||||:...|.|:....  |.|.|.|||:
  Fly    41 AGASATLSVELCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMN--CEVTKHHRNR 103

  Fly    88 CRACRLRKCFEVGMNKDAVQHERGP----------------------RNSTLRRHMAMYKDAMMG 130
            |:.|||:||...||..|:|||||.|                      .:||.....:.|:   .|
  Fly   104 CQFCRLQKCLASGMRSDSVQHERKPIVDRKEGIIAAAGSSSTSGGGNGSSTYLSGKSGYQ---QG 165

  Fly   131 AGEMPQIPAEIL----MNTAALTGF---------------------------------------- 151
            .|:...:.||..    :::|..|.|                                        
  Fly   166 RGKGHSVKAESAATPPVHSAPATAFNLNENIFPMGLNFAELTQTLMFATQQQQQQQQQHQQSGSY 230

  Fly   152 -PGVPMPMP-----------------------------GLPQRAGHHPAHMAAFQPPPSAAAVLD 186
             |.:|...|                             .|...||..|..:    |..|...::.
  Fly   231 SPDIPKADPEDDEDDSMDNSSTLCLQLLANSASNNNSQHLNFNAGEVPTAL----PTTSTMGLIQ 291

  Fly   187 LSVP-RVPH------HPV---------------------------------------------HQ 199
            .|:. ||.|      .|:                                             ..
  Fly   292 SSLDMRVIHKGLQILQPIQNQLERNGNLSVKPECDSEAEDSGTEDAVDAELEHMELDFECGGNRS 356

  Fly   200 GHHGFFSPTAAYMNALAT------RALPPT--PPLMAAEHIKETAAEHLFKNVNWIKSVRAFTEL 256
            |...|....|.:...|.|      ...|||  ...:...::.||.:..:|..::.::.|..|.:|
  Fly   357 GGSDFAINEAVFEQDLLTDVQCAFHVQPPTLVHSYLNIHYVCETGSRIIFLTIHTLRKVPVFEQL 421

  Fly   257 PMPDQLLLLEESWKEFFILAMA----QYLMP-------MNFAQLLFVYESENANREIMGMVTREV 310
            ....|:.||...|.....:|:|    |..:|       .:..||..:.:.|......|..:||.:
  Fly   422 EAHTQVKLLRGVWPALMAIALAQCQGQLSVPTIIGQFIQSTRQLADIDKIEPLKISKMANLTRTL 486

  Fly   311 HAFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTEDLANSSILTGSGSPNSSASAESRGL 375
            |.|   :.:|..|::...|:..||.|.||                       :|......:.|.|
  Fly   487 HDF---VQELQSLDVTDMEFGLLRLILLF-----------------------NPTLLQQRKERSL 525

  Fly   376 LESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIV 440
              .|.|..:...|.|:|..  |........||..|:..:..:..:.:..:|||||...:|.:.:.
  Fly   526 --RGYVRRVQLYALSSLRR--QGGIGGGEERFNVLVARLLPLSSLDAEAMEELFFANLVGQMQMD 586

  Fly   441 RLI 443
            .||
  Fly   587 ALI 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tllNP_524596.1 NR_DBD_TLX 25..117 CDD:143537 46/113 (41%)
NR_LBD 215..436 CDD:416257 52/239 (22%)
Hr78NP_001189151.1 NR_DBD_TR2_like 47..133 CDD:143525 44/87 (51%)
NR_LBD_TR2_like 372..595 CDD:132750 55/248 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444767
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24083
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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